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Brent Lab

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  1. Dual_Threshold_Optimization Dual_Threshold_Optimization Public

    Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It…

    Rust 4 2

  2. GOeval GOeval Public

    Gene Regulatory Network Evaluation Using Gene Ontology

    R 1

Repositories

Showing 10 of 25 repositories
  • tfbpshiny Public

    A shiny frontend for django.tfbindingandperturbation.com. This can be accessed at tfbindingandperturbation.com

    BrentLab/tfbpshiny’s past year of commit activity
    Python 0 2 11 8 Updated Jan 20, 2026
  • tfbpapi Public

    A collection of classes and functions which serve as an API to django.tfbindingandperturbation.com

    BrentLab/tfbpapi’s past year of commit activity
    Python 0 3 13 5 Updated Jan 8, 2026
  • tfbpmodeling Public

    A collections of functions and utilities to perform modeling tasks on the data from django.tfbindingandperturbation.com

    BrentLab/tfbpmodeling’s past year of commit activity
    Python 0 5 6 8 Updated Dec 1, 2025
  • cryptococcus_net Public

    A TF network map for cryptococcus

    BrentLab/cryptococcus_net’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Oct 27, 2025
  • METANet Public

    Data, scripts, references for reproducibility of METANets

    BrentLab/METANet’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Oct 21, 2025
  • fishnet Public
    BrentLab/fishnet’s past year of commit activity
    Python 1 3 0 0 Updated Sep 30, 2025
  • Dual_Threshold_Optimization Public

    Dual Threshold Optimization compares two ranked lists of features (e.g. genes) to determine the rank threshold for each list that minimizes the hypergeometric p-value of the overlap of features. It then calculates a permutation based empirical p-value and an FDR

    BrentLab/Dual_Threshold_Optimization’s past year of commit activity
    Rust 4 MIT 2 1 0 Updated Aug 19, 2025
  • dockerize_rstudio_server Public
    BrentLab/dockerize_rstudio_server’s past year of commit activity
    Shell 1 0 0 0 Updated Jun 11, 2025
  • NetSurgeon Public

    NetSurgeon is a novel algorithm that utilizes genome-wide gene regulatory networks to identify interventions that force a cell toward a desired expression state

    BrentLab/NetSurgeon’s past year of commit activity
    R 0 MIT 0 0 0 Updated Apr 24, 2025
  • brentlab.github.io Public

    Brent Lab @ WashU

    BrentLab/brentlab.github.io’s past year of commit activity
    HTML 0 0 0 0 Updated Jan 6, 2025
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