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24 changes: 23 additions & 1 deletion MhcVizPipe/gui.py
Original file line number Diff line number Diff line change
Expand Up @@ -1200,7 +1200,29 @@ def download_data_file(tool: str) -> None:
print('\nExtracting archive... ', end="", flush=True)
try:
with tarfile.open('./data.tar.gz', 'r:gz') as tar:
tar.extractall()

import os

def is_within_directory(directory, target):

abs_directory = os.path.abspath(directory)
abs_target = os.path.abspath(target)

prefix = os.path.commonprefix([abs_directory, abs_target])

return prefix == abs_directory

def safe_extract(tar, path=".", members=None, *, numeric_owner=False):

for member in tar.getmembers():
member_path = os.path.join(path, member.name)
if not is_within_directory(path, member_path):
raise Exception("Attempted Path Traversal in Tar File")

tar.extractall(path, members, numeric_owner=numeric_owner)


safe_extract(tar)
except Exception:
print(f'\nERROR: Sorry! There was a problem extracting the downloaded data file for {tool}. This might be due to '
f'a corrupted download. Please try restarting the program and if the problem persists download the data '
Expand Down