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Simplified ecephys#8
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CodyCBakerPhD merged 2 commits intomainfrom Feb 6, 2026
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h-mayorquin
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Feb 6, 2026
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Sure, why not, feel free to do add the overlay it should be pretty easy.
The notebook is currently giving an error though:
line 1KeyError: "'mean_image' not found in Images 'SummaryImages'."
here:
summary_image = nwbfile.processing["ophys"]["SummaryImages"]["mean_image"].data
plt.figure(figsize=(10, 8))
plt.imshow(summary_image[:], cmap='gray')
plt.title('Mean Summary Image of Imaging Field')
plt.xlabel('X (pixels)')
plt.ylabel('Y (pixels)')
plt.colorbar(label='Intensity')
plt.tight_layout()
plt.show()
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Yep that was resolved in #7 |
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Showcase of very simple bare-bones frame pulling from 'deep' within corresponding video
Also setup streaming of processed ecephys file (I assume you don't need raw for the waveform plots?)
Also hard-coding asset paths rather than doing search. Could also just hard-code the S3 urls if you prefer