Learning transmission dynamics modelling of COVID-19 using ComoModels

Interactive notebooks accompanying the article Learning transmission dynamics modelling of COVID-19 using ComoModels.

Contents

This repository holds three R Markdown vignettes:

1. S1: On the numerical solution of compartmental models
2. S2: The importance of uncertainty in age-specific contact patterns for quantifying COVID-19 risk
3. S3: The importance of sensitivity analysis and model inference

Within each folder, there are also rendered pdf files.

Instructions

All vignettes require that the comomodels package be installed, which can be executed via the following R command:

# install devtools if necessary through
# install.packages("devtools")

# install package
devtools::install_github("Como-DTC-Collaboration/como-models")