v1.3.0-beta1

What's Changed

• BEAST3 migration: JPMS module, Maven Central, CI by @alexeid in #23
• Bump beast.version to 2.8.0-beta5 by @alexeid in #25
• ci: clean-deploy on tag and skip redundant verify by @alexeid in #26
• Bump project version to 1.3.0-beta1 by @alexeid in #27
• Update repo URLs and Nicola's name spelling by @alexeid in #28
• Bump README Maven version to 1.3.0-beta1 by @alexeid in #29

New Contributors

• @alexeid made their first contribution in #23

Full Changelog: v1.2.0...v1.3.0-beta1

CoupleMCMC

BEAST v2.7 compatible

Fixes 0 temp bug, updates citation and allows likelihood heating only

v1.1.0

updates version and citation

Introduced new swapping options

Introduces neighbour swapping where swapping is only performed between chains with neighbouring temperatures. Also introduces temperature definitions based on the quantiles of a beta distribution where alpha=1 and beta is a tuning parameter

Adaptive parallel tempering version

v1.0.1

updates version xml and adds new example

Adds adaptive temperature tuning

v1.0.0

updates version

Coupled MCMC v0.1.8

Solves issue with BEAST v2.6

Fixes resuming bug with loggers

Fixes bug when resuming runs that logger headers are printed again

Bug fix with spec="logger"

When converting to mcmc xml, all spec="logger" are removed

Fixes bug when heated chains are not logged

Changes how the heated chains are not logged such that each logger has a flag telling it to log or not to log. Also removes the gamma distribution, adds MCMC2CoupledMCMC tool.