Add CDL development environment setup scripts #180
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- Create scripts/setup.sh for macOS/Linux with idempotent installs - Homebrew, Git, Slack, VS Code, LaTeX, Dropbox, Miniconda - CDL conda environment setup with verification - Create scripts/setup.ps1 for Windows with winget support - Same functionality as Unix script for Windows users - Create scripts/cdl-environment.yml conda environment spec - Python 3.11 with numpy, scipy, pandas, polars, matplotlib - PyTorch, transformers, diffusers, datasets - CDL packages: hypertools, quail, timecorr, supereeg - Create tests/test_cdl_environment.py integration tests - Real imports only, no mocks - Tests for all major package categories - @pytest.mark.slow for network-dependent tests - Update lab_manual.tex with development environment section - Instructions for running setup script - Support resources and help contacts Addresses #59 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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@jeremymanning The LaTeX compilation failed with the following errors: |
Add -f flag to rm command to prevent exit code 1 when cleanup tries to delete files that don't exist (e.g., *.fdb_latexmk). This was causing GitHub Actions CI to fail despite successful PDF compilation. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-Authored-By: Claude <noreply@anthropic.com>
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@jeremymanning The LaTeX compilation failed with the following errors: |
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Summary
Implements cross-platform development environment setup for CDL research (#59)
scripts/setup.sh - Idempotent bash script for macOS/Linux
scripts/setup.ps1 - Idempotent PowerShell script for Windows
scripts/cdl-environment.yml - Conda environment specification
tests/test_cdl_environment.py - Integration tests (no mocks)
lab_manual.tex - Documentation updates
Test plan
Usage
Closes #59
🤖 Generated with Claude Code