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18 changes: 9 additions & 9 deletions CONTRIBUTING.md
Original file line number Diff line number Diff line change
Expand Up @@ -30,13 +30,13 @@ All types of contributions are encouraged and valued. See the [Table of Contents

## I Have a Question

> If you want to ask a question, we assume that you have read the available [Documentation](https://nationalparkservice.github.io/NPSdataverse/).
> If you want to ask a question, we assume that you have read the available [Documentation](https://doi-nps.github.io/NPSdataverse/).

Before you ask a question, it is best to search for existing [Issues](https://github.com/nationalparkservice/NPSdataverse/issues) that might help you. In case you have found a suitable issue and still need clarification, you can write your question in this issue. It is also advisable to search the internet for answers first.
Before you ask a question, it is best to search for existing [Issues](https://github.com/doi-nps/NPSdataverse/issues) that might help you. In case you have found a suitable issue and still need clarification, you can write your question in this issue. It is also advisable to search the internet for answers first.

If you then still feel the need to ask a question and need clarification, we recommend the following:

- Open an [Issue](https://github.com/nationalparkservice/NPSdataverse/issues/new/choose).
- Open an [Issue](https://github.com/doi-nps/NPSdataverse/issues/new/choose).
- Provide as much context as you can about what you're running into.
- Provide project and platform versions , depending on what seems relevant.

Expand All @@ -57,8 +57,8 @@ We will then take care of the issue as soon as possible.
A good bug report shouldn't leave others needing to chase you up for more information. Therefore, we ask you to investigate carefully, collect information and describe the issue in detail in your report. Please complete the following steps in advance to help us fix any potential bug as fast as possible.

- Make sure that you are using the latest version.
- Determine if your bug is really a bug and not an error on your side e.g. using incompatible environment components/versions (Make sure that you have read the [documentation](https://nationalparkservice.github.io/NPSdataverse/). If you are looking for support, you might want to check [this section](#i-have-a-question)).
- To see if other users have experienced (and potentially already solved) the same issue you are having, check if there is not already a bug report existing for your bug or error in the [bug tracker](https://github.com/nationalparkservice/NPSdataverse/issues/new/choose).
- Determine if your bug is really a bug and not an error on your side e.g. using incompatible environment components/versions (Make sure that you have read the [documentation](https://doi-nps.github.io/NPSdataverse/). If you are looking for support, you might want to check [this section](#i-have-a-question)).
- To see if other users have experienced (and potentially already solved) the same issue you are having, check if there is not already a bug report existing for your bug or error in the [bug tracker](https://github.com/doi-nps/NPSdataverse/issues/new/choose).
- Also make sure to search the internet to see if users outside of the GitHub community have discussed the issue.
- Collect information about the bug:
- Stack trace (Traceback)
Expand All @@ -75,7 +75,7 @@ A good bug report shouldn't leave others needing to chase you up for more inform

We use GitHub issues to track bugs and errors. If you run into an issue with the project:

- Open an [Issue](https://github.com/nationalparkservice/NPSdataverse/issues/new/choose). (Since we can't be sure at this point whether it is a bug or not, we ask you not to talk about a bug yet and not to label the issue.)
- Open an [Issue](https://github.com/doi-nps/NPSdataverse/issues/new/choose). (Since we can't be sure at this point whether it is a bug or not, we ask you not to talk about a bug yet and not to label the issue.)
- Explain the behavior you would expect and the actual behavior.
- Please provide as much context as possible and describe the *reproduction steps* that someone else can follow to recreate the issue on their own. This usually includes your code. For good bug reports you should isolate the problem and create a reduced test case. See [https://gist.github.com/hadley/270442](https://gist.github.com/hadley/270442) for a great run down on how to create reproducible examples.
- Provide the information you collected in the previous section.
Expand All @@ -94,15 +94,15 @@ This section guides you through submitting an enhancement **including completely
#### Before Submitting an Enhancement

- Make sure that you are using the latest version.
- Read the [documentation](https://nationalparkservice.github.io/NPSdataverse/) carefully and find out if the functionality is already covered, maybe by an individual configuration.
- Perform a [search](https://github.com/nationalparkservice/NPSdataverse/issues) to see if the enhancement has already been suggested. If it has, add a comment to the existing issue instead of opening a new one.
- Read the [documentation](https://doi-nps.github.io/NPSdataverse/) carefully and find out if the functionality is already covered, maybe by an individual configuration.
- Perform a [search](https://github.com/doi-nps/NPSdataverse/issues) to see if the enhancement has already been suggested. If it has, add a comment to the existing issue instead of opening a new one.
- Find out whether your idea fits with the scope and aims of the project. It's up to you to make a strong case to convince the project's developers of the merits of this feature. Keep in mind that we want features that will be useful to the majority of our users and not just a small subset. If you're just targeting a minority of users, consider writing an add-on/plugin library or package.
- Please consult with the developers if you would like to create an add-on package. Maybe we can help!


#### How Do I Submit a Good Enhancement Suggestion?

Enhancement suggestions are tracked as [GitHub issues](https://github.com/nationalparkservice/NPSdataverse/issues).
Enhancement suggestions are tracked as [GitHub issues](https://github.com/doi-nps/NPSdataverse/issues).

- Use a **clear and descriptive title** for the issue to identify the suggestion.
- Provide a **step-by-step description of the suggested enhancement** in as many details as possible.
Expand Down
19 changes: 8 additions & 11 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -7,16 +7,13 @@ Authors@R: c(
comment = c(ORCID = "0000-0001-7591-5035")),
person(given="Judd", family="Patterson", email="Judd_Patterson@nps.gov",
role= "aut",
comment = c(ORCID = "0000-0002-0951-7917")),
person(given="Joe", family="DeVivo", email="Joe_DeVivo@nps.gov",
role= "aut",
comment = c(ORCID = "0000-0002-0414-7865"))
comment = c(ORCID = "0000-0002-0951-7917"))
)
Description: Loads a suite of R packages for creating and manipulating data packages including interacting with DataStore.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
RoxygenNote: 7.3.3
Imports:
cli,
DPchecker (>= 1.0.0),
Expand All @@ -32,16 +29,16 @@ Imports:
stringr,
tibble
Remotes:
nationalparkservice/DPchecker,
nationalparkservice/EMLeditor,
nationalparkservice/NPSutils,
nationalparkservice/QCkit,
doi-nps/DPchecker,
doi-nps/EMLeditor,
doi-nps/NPSutils,
doi-nps/QCkit,
EDIorg/EMLassemblyline
Suggests:
knitr,
rmarkdown,
testthat (>= 3.0.0)
VignetteBuilder: knitr
URL: https://github.com/nationalparkservice/NPSdataverse
BugReports: https://github.com/nationalparkservice/NPSdataverse/issues
URL: https://github.com/doi-nps/NPSdataverse
BugReports: https://github.com/doi-nps/NPSdataverse/issues
Config/testthat/edition: 3
3 changes: 3 additions & 0 deletions NEWS.md
Original file line number Diff line number Diff line change
@@ -1,4 +1,7 @@
# NPSdataverse 1.1.0
2026-04-22
* Update URLs and add code.json for migration to DGEC

2025-04-21
* Update JOSS badge to "in review"

Expand Down
12 changes: 6 additions & 6 deletions R/updateR.R
Original file line number Diff line number Diff line change
Expand Up @@ -16,12 +16,12 @@
"NPSdataverse"
),
repo = c(
"nationalparkservice",
"nationalparkservice",
"nationalparkservice",
"nationalparkservice",
"doi-nps",
"doi-nps",
"doi-nps",
"doi-nps",
"EDIorg",
"nationalparkservice"),
"doi-nps"),
branch = c(
"master",
"main",
Expand Down Expand Up @@ -54,7 +54,7 @@
"{.strong To update {cli::qty(length(old_pkgs$package))}th{?is/ese} {cli::qty(length(old_pkgs$package))}package{?s}, please run:\n}"
)
cli::cat_line("detach_NPSdataverse()")
cli::cat_line("devtools::install_github(\"", old_pkgs$repo, "/", old_pkgs$package, "\")")
cli::cat_line("remotes::install_github(\"", old_pkgs$repo, "/", old_pkgs$package, "\")")
cli::cat_line("\nClose R and Rstudio. Open a new R session and reload the NPSdataverse.")
cli::cat_line()
} else {
Expand Down
20 changes: 10 additions & 10 deletions README.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -5,7 +5,7 @@ output: github_document
<!-- README.md is generated from README.Rmd. Please edit that file -->

<!-- badges: start -->
[![R-CMD-check](https://github.com/nationalparkservice/NPSdataverse/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/nationalparkservice/NPSdataverse/actions/workflows/R-CMD-check.yaml)
[![R-CMD-check](https://github.com/doi-nps/NPSdataverse/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/nationalparkservice/NPSdataverse/actions/workflows/R-CMD-check.yaml)
[![status](https://joss.theoj.org/papers/4f0f426403cd0e5f089ad527fb66ce51/status.svg)](https://joss.theoj.org/papers/4f0f426403cd0e5f089ad527fb66ce51)
<!-- badges: end -->

Expand All @@ -30,42 +30,42 @@ knitr::opts_chunk$set(
knitr::include_graphics("man/figures/NPSdataverse_overview.jpg")
# ![alt text]("man/figures/NPSdataverse_overview.jpg")
```
NPSdataverse loads a suite of R packages for creating, manipulating, and accessing data packages including interacting with DataStore. This is an early version of the NPSdataverse. Please request enhancements and bug fixes through [Issues](https://github.com/nationalparkservice/NPSdataverse/issues).
NPSdataverse loads a suite of R packages for creating, manipulating, and accessing data packages including interacting with DataStore. This is an early version of the NPSdataverse. Please request enhancements and bug fixes through [Issues](https://github.com/doi-nps/NPSdataverse/issues).

## Installation

You can install the development version of NPSdataverse from [GitHub](https://github.com/) with:

``` r
# install.packages("pak")
pak::pkg_install("nationalparkservice/NPSdataverse")
pak::pkg_install("doi-nps/NPSdataverse")
```

NPSdataverse will install the following R packages:

| Package | Location|
|---------|---------|
|**QCkit**| https://nationalparkservice.github.io/QCkit|
|**QCkit**| https://doi-nps.github.io/QCkit|
|EMLassemblyline (EAL)| https://ediorg.github.io/EMLassemblyline|
|EML| https://cran.r-project.org/package=EML|
|**EMLeditor**| https://nationalparkservice.github.io/EMLeditor|
|**DPchecker**| https://nationalparkservice.github.io/DPchecker|
|**NPSutils**| https://nationalparkservice.github.io/NPSutils|
|**EMLeditor**| https://doi-nps.github.io/EMLeditor|
|**DPchecker**| https://doi-nps.github.io/DPchecker|
|**NPSutils**| https://doi-nps.github.io/NPSutils|

***
(R packages in **bold** are developed by NPS)

## Usage

```{r setup, eval = FALSE}
pak::pkg_install("nationalparkservice/NPSdataverse")
pak::pkg_install("doi-nps/NPSdataverse")
library(NPSdataverse)
```


## Troubleshooting installation

If `pak::pkg_install()` throws an error, try `remotes::install_github("nationalparkservice/NPSdataverse")` instead.
If `pak::pkg_install()` throws an error, try `remotes::install_github("doi-nps/NPSdataverse")` instead.

Each package within the NPSdataverse has a number of dependencies, most of which
are hosted on CRAN. During the initial install of NPSdataverse, you may be
Expand Down Expand Up @@ -116,5 +116,5 @@ knitr::include_graphics("man/figures/EMLtemplate.png")



This will open a new file on that you can edit to generate EML metadata for your data package. See the [web pages associated with EMLeditor](https://nationalparkservice.github.io/EMLeditor/) for additional information, instructions, and examples.
This will open a new file on that you can edit to generate EML metadata for your data package. See the [web pages associated with EMLeditor](https://doi-nps.github.io/EMLeditor/) for additional information, instructions, and examples.

24 changes: 14 additions & 10 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,7 +3,7 @@

<!-- badges: start -->

[![R-CMD-check](https://github.com/nationalparkservice/NPSdataverse/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/nationalparkservice/NPSdataverse/actions/workflows/R-CMD-check.yaml)
[![R-CMD-check](https://github.com/doi-nps/NPSdataverse/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/doi-nps/NPSdataverse/actions/workflows/R-CMD-check.yaml)
[![status](https://joss.theoj.org/papers/4f0f426403cd0e5f089ad527fb66ce51/status.svg)](https://joss.theoj.org/papers/4f0f426403cd0e5f089ad527fb66ce51)
<!-- badges: end -->

Expand All @@ -14,7 +14,7 @@ NPSdataverse loads a suite of R packages for creating, manipulating, and
accessing data packages including interacting with DataStore. This is an
early version of the NPSdataverse. Please request enhancements and bug
fixes through
[Issues](https://github.com/nationalparkservice/NPSdataverse/issues).
[Issues](https://github.com/doi-nps/NPSdataverse/issues).

## Installation

Expand All @@ -23,19 +23,21 @@ You can install the development version of NPSdataverse from

``` r
# install.packages("pak")
pak::pkg_install("nationalparkservice/NPSdataverse")
pak::pkg_install("doi-nps/NPSdataverse")
# alternatively:
remotes::install_github("doi-nps/NPSdataverse")
```

NPSdataverse will install the following R packages:

| Package | Location |
|-----------------------|---------------------------------------------------|
| **QCkit** | <https://nationalparkservice.github.io/QCkit> |
| **QCkit** | <https://doi-nps.github.io/QCkit> |
| EMLassemblyline (EAL) | <https://ediorg.github.io/EMLassemblyline> |
| EML | <https://cran.r-project.org/package=EML> |
| **EMLeditor** | <https://nationalparkservice.github.io/EMLeditor> |
| **DPchecker** | <https://nationalparkservice.github.io/DPchecker> |
| **NPSutils** | <https://nationalparkservice.github.io/NPSutils> |
| **EMLeditor** | <https://doi-nps.github.io/EMLeditor> |
| **DPchecker** | <https://doi-nps.github.io/DPchecker> |
| **NPSutils** | <https://doi-nps.github.io/NPSutils> |

------------------------------------------------------------------------

Expand All @@ -44,14 +46,16 @@ NPSdataverse will install the following R packages:
## Usage

``` r
pak::pkg_install("nationalparkservice/NPSdataverse")
pak::pkg_install("doi-nps/NPSdataverse")
# or:
# remotes::install_github("doi-nps/NPSdataverse")
library(NPSdataverse)
```

## Troubleshooting installation

If `pak::pkg_install()` throws an error, try
`remotes::install_github("nationalparkservice/NPSdataverse")` instead.
`remotes::install_github("doi-nps/NPSdataverse")` instead.

Each package within the NPSdataverse has a number of dependencies, most
of which are hosted on CRAN. During the initial install of NPSdataverse,
Expand Down Expand Up @@ -98,5 +102,5 @@ the template labelled “Editable_EML_Creation_Workflow” and click “OK”.

This will open a new file on that you can edit to generate EML metadata
for your data package. See the [web pages associated with
EMLeditor](https://nationalparkservice.github.io/EMLeditor/) for
EMLeditor](https://doi-nps.github.io/EMLeditor/) for
additional information, instructions, and examples.
55 changes: 55 additions & 0 deletions code.json
Original file line number Diff line number Diff line change
@@ -0,0 +1,55 @@
[
{
"name": "NPSdataverse",
"organization": "NATIONAL PARK SERVICE",
"description": "Loads a suite of R packages for creating and manipulating data packages including interacting with DataStore.",
"version": "1.1.0",
"status": "ongoing development",
"permissions": {
"usageType": "openSource",
"licenses": [
{
"name": "Public Domain, CC0-1.0",
"URL": "https://github.com/DOI-NPS/NPSdataverse"
}
]
},
"homepageURL": "https://github.com/DOI-NPS/NPSdataverse",
"downloadURL": "https://github.com/DOI-NPS/NPSdataverse",
"disclaimerURL": "hhtps://github.com/DOI-NPS/NPSdataverse/blob/main/LICENSE",
"repositoryURL": "https://github.com/DOI-NPS/NPSdataverse",
"vcs": "git",
"laborHours": 1,
"tags": [
"NRSS",
"IMD",
"metadata",
"r",
"accessible",
"open-data",
"datastore",
"data-package",
"r-package",
"ecological-metadata-language",
"eml",
"data-packages",
"national-parks",
"findable",
"interoperable",
"eml-metadata",
"machine-readable"
"national-park-service",
"reuseable"
],
"languages": [
"R"
],
"contact": {
"name": "Robert Baker",
"email": "robert_baker@nps.gov"
},
"date": {
"metadataLastUpdated": "2026-04-22"
}
}
]
6 changes: 3 additions & 3 deletions docs/404.html

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6 changes: 3 additions & 3 deletions docs/LICENSE-text.html

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6 changes: 3 additions & 3 deletions docs/LICENSE.html

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