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Updated ARC Zeus submit script #42

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Updated ARC Zeus submit script #42

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7 changes: 3 additions & 4 deletions Servers/Zeus/ARC/submit.sh
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Original file line number Diff line number Diff line change
@@ -1,9 +1,9 @@
#!/bin/bash -l

#PBS -N <name> # Note: Manually change this job name, and delete this comment
#PBS -q zeus_new_q
#PBS -q alon_q
#PBS -l walltime=72:00:00
#PBS -l select=1:ncpus=1
#PBS -l select=1:ncpus=1:host=n170
#PBS -o out.txt
#PBS -e err.txt

Expand All @@ -12,5 +12,4 @@ cd $PBS_O_WORKDIR

conda activate arc_env

python $arc_code/ARC.py input.yml

python $arc_path/ARC.py input.yml
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Copilot AI Apr 27, 2026

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submit.sh calls python $arc_path/ARC.py ..., but in Servers/Zeus/.bashrc this repo exports arc_path as '~/Code/ARC/' (tilde inside quotes). Bash does not perform tilde expansion on values coming from variables, so this can resolve to a non-existent path at runtime. Prefer exporting arc_path as an absolute path (e.g., using $HOME), or set/normalize arc_path in this script before invoking Python so the job doesn't fail due to an unexpanded ~.

Suggested change
python $arc_path/ARC.py input.yml
arc_path="${arc_path/#\~/$HOME}"
python "$arc_path/ARC.py" input.yml

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