Local gradle pulbish and project refactoring into packages

.gitignore

@@ -11,6 +11,13 @@
 # virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
 hs_err_pid*
 
+# Java Files #
+*.jar
+
+# Intellij Idea
+.idea
+
 # Gradle stuff
 build/
 .gradle/
+gradle

README.md

@@ -96,10 +96,28 @@ You can clone the code, compile, and build the JAR file the regular command-line
 way.
 
 We use [Gradle](https://gradle.org/) for connvenience.
-- [install Gradle](https://gradle.org/install)
+- **(on Linux or Mac)** run `chmod +x gradlew`
 - run `gradle test` for unit tests (currently correctness tests)
 - run `gradle build` to find the `apted.jar` file in `build/libs/`
 
+## Deploying to local maven repository
+
+You can publish the project into your local maven repository to import into other projects.
+
+- run `gradle publishToMavenLocal` 
+
+To use APTED in another project:
+
+```
+repositories {
+  mavenLocal()
+}
+
+dependencies {
+  compile 'at.unisalzburg:apted:1.0'
+}
+  ```
+
 ## Javadoc documentation
 
 Run `gradle javadoc` to generate documentation. Then, open in your browser

build.gradle

@@ -1,4 +1,8 @@
+group 'at.unisalzburg'
+version '1.0'
+
 apply plugin: 'java'
+apply plugin: "maven-publish"
 
 // Dependency repository.
 repositories {
@@ -11,13 +15,6 @@ dependencies {
                 'com.google.code.gson:gson:2.8.0'
 }
 
-// Specify main class for the JAR file.
-jar {
-    manifest {
-        attributes 'Main-Class': 'util.CommandLine'
-    }
-}
-
 // Include test classes and private members into javadoc.
 javadoc {
   classpath += sourceSets.test.compileClasspath
@@ -29,3 +26,27 @@ javadoc {
 test {
   testLogging.showStandardStreams = true
 }
+
+// For publishing in MavenLocal
+task sourcesJar(type: Jar, dependsOn: "classes") {
+  classifier = 'sources'
+
+  from sourceSets.main.allSource
+  from sourceSets.test.allSource
+}
+
+publishing {
+    publications {
+        mavenJava(MavenPublication) {
+            groupId 'at.unisalzburg'
+            artifactId 'apted'
+            version '1.0'
+
+            from components.java
+
+            artifact sourcesJar {
+                classifier "sources"
+            }
+        }
+    }
+}

gradle/wrapper/gradle-wrapper.properties

@@ -0,0 +1,6 @@
+#Thu May 18 15:43:57 CEST 2017
+distributionBase=GRADLE_USER_HOME
+distributionPath=wrapper/dists
+zipStoreBase=GRADLE_USER_HOME
+zipStorePath=wrapper/dists
+distributionUrl=https\://services.gradle.org/distributions/gradle-3.2.1-all.zip

src/main/java/costmodel/CostModel.java → src/main/java/at/unisalzburg/apted/costmodel/CostModel.java

@@ -21,9 +21,9 @@
  * SOFTWARE.
  */
 
-package costmodel;
+package at.unisalzburg.apted.costmodel;
 
-import node.Node;
+import at.unisalzburg.apted.node.Node;
 
 /**
  * This interface specifies the methods to implement for a custom cost model.

src/main/java/costmodel/PerEditOperationStringNodeDataCostModel.java → src/main/java/at/unisalzburg/apted/costmodel/PerEditOperationStringNodeDataCostModel.java

@@ -21,14 +21,13 @@
  * SOFTWARE.
  */
 
-package costmodel;
+package at.unisalzburg.apted.costmodel;
 
-import costmodel.CostModel;
-import node.Node;
-import node.StringNodeData;
+import at.unisalzburg.apted.node.Node;
+import at.unisalzburg.apted.node.StringNodeData;
 
 /**
- * This is a cost model defined on {@link node.StringNodeData} with a fixed cost
+ * This is a cost model defined on {@link at.unisalzburg.apted.node.StringNodeData} with a fixed cost
  * per edit operation.
  */
 public class PerEditOperationStringNodeDataCostModel implements CostModel<StringNodeData> {

src/main/java/costmodel/StringUnitCostModel.java → src/main/java/at/unisalzburg/apted/costmodel/StringUnitCostModel.java

@@ -21,11 +21,10 @@
  * SOFTWARE.
  */
 
-package costmodel;
+package at.unisalzburg.apted.costmodel;
 
-import costmodel.CostModel;
-import node.Node;
-import node.StringNodeData;
+import at.unisalzburg.apted.node.Node;
+import at.unisalzburg.apted.node.StringNodeData;
 
 /**
  * This is a unit-nost model defined on string labels.

src/main/java/distance/APTED.java → src/main/java/at/unisalzburg/apted/distance/APTED.java

@@ -21,14 +21,14 @@
  * SOFTWARE.
  */
 
-package distance;
+package at.unisalzburg.apted.distance;
 
 import java.util.Arrays;
 import java.util.LinkedList;
 import java.util.Stack;
-import node.Node;
-import node.NodeIndexer;
-import costmodel.CostModel;
+import at.unisalzburg.apted.node.Node;
+import at.unisalzburg.apted.node.NodeIndexer;
+import at.unisalzburg.apted.costmodel.CostModel;
 
 /**
  * Implements APTED algorithm [1,2].
@@ -76,14 +76,14 @@ public class APTED<C extends CostModel, D> {
   /**
    * Indexer of the source tree.
    *
-   * @see node.NodeIndexer
+   * @see at.unisalzburg.apted.node.NodeIndexer
    */
   private NodeIndexer it1;
 
   /**
    * Indexer of the destination tree.
    *
-   * @see node.NodeIndexer
+   * @see at.unisalzburg.apted.node.NodeIndexer
    */
   private NodeIndexer it2;
 

src/main/java/distance/AllPossibleMappingsTED.java → src/main/java/at/unisalzburg/apted/distance/AllPossibleMappingsTED.java

@@ -21,14 +21,14 @@
  * SOFTWARE.
  */
 
-package distance;
+package at.unisalzburg.apted.distance;
 
 import java.util.ArrayList;
 import java.util.Arrays;
 import java.util.Iterator;
-import node.Node;
-import node.NodeIndexer;
-import costmodel.CostModel;
+import at.unisalzburg.apted.node.Node;
+import at.unisalzburg.apted.node.NodeIndexer;
+import at.unisalzburg.apted.costmodel.CostModel;
 
 /**
  * Implements an exponential algorithm for the tree edit distance. It computes
@@ -43,14 +43,14 @@ public class AllPossibleMappingsTED<C extends CostModel, D> {
   /**
    * Indexer of the source tree.
    *
-   * @see node.NodeIndexer
+   * @see at.unisalzburg.apted.node.NodeIndexer
    */
   private NodeIndexer it1;
 
   /**
    * Indexer of the destination tree.
    *
-   * @see node.NodeIndexer
+   * @see at.unisalzburg.apted.node.NodeIndexer
    */
   private NodeIndexer it2;