feat: add automated testing, validation tools, and contributor docs

.github/workflows/ci.yml

@@ -0,0 +1,39 @@
+name: CI
+
+on:
+  pull_request:
+    branches: [ main, master ]
+  push:
+    branches: [ main, master ]
+
+jobs:
+  validate-and-build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v6
+
+    - name: Setup Ruby
+      uses: ruby/setup-ruby@v1
+      with:
+        ruby-version: '3.1'
+        bundler-cache: true
+
+    - name: Validate YAML files
+      run: ruby scripts/validate_yaml.rb
+
+    - name: Validate posts
+      run: bash scripts/validate_posts.sh
+
+    - name: Build Jekyll site
+      run: bundle exec jekyll build
+      env:
+        JEKYLL_ENV: production
+
+    - name: Test with html-proofer
+      run: |
+        bundle exec htmlproofer ./_site \
+          --disable-external \
+          --ignore-urls "/^http:\/\/127.0.0.1/,/^http:\/\/0.0.0.0/,/^http:\/\/localhost/" \
+          --allow-hash-href
+

.gitignore

@@ -1,3 +1,30 @@
+# Include your project-specific ignores in this file
+# Read about how to use .gitignore: https://help.github.com/articles/ignoring-files
+# Useful .gitignore templates: https://github.com/github/gitignore
+
+# Node.js
+node_modules
+dist
+.cache
+
+# Jekyll
 _site/
+.sass-cache/
+.jekyll-cache/
+.jekyll-metadata
+
+# Ruby
+.bundle/
+vendor/bundle/
+*.gem
+
+# OS
 .DS_Store
-Gemfile.lock
+Thumbs.db
+
+# Editor
+.vscode/
+.idea/
+*.swp
+*.swo
+*~

.ruby-version

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+3.1.0
+

CONTRIBUTING.md

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+# Contributing to Deep-MI Website
+
+Thank you for contributing to the Deep-MI lab website! This guide will help you add content correctly.
+
+## Table of Contents
+
+- [Creating News Posts](#creating-news-posts)
+- [Adding Members](#adding-members)
+- [Adding Publications](#adding-publications)
+- [Validation Before Committing](#validation-before-committing)
+- [Local Development](#local-development)
+
+## Creating News Posts
+
+1. **Create a new file** in `_posts/` directory
+2. **Name it**: `YYYY-MM-DD-Short-Title.md` (e.g., `2026-02-13-New-Grant.md`)
+3. **Use the template** from `_templates/post-template.md`
+
+### Required Front Matter
+
+```yaml
+---
+title: Your Article Title
+author: First Lastname
+layout: post
+group: news
+---
+```
+
+### Tips
+
+- Use Markdown for formatting
+- Include images in `/static/img/` directory
+- Keep image file sizes reasonable (< 500KB)
+
+## Adding Members
+
+1. **Add member info** to `_data/members.yml`
+2. **Prepare photo**: 365×365 pixels, 72 DPI, JPEG format
+3. **Save photo** to `/static/img/members/lastname.jpg`
+4. **Use the template** from `_templates/member-template.md`
+
+### Required Fields
+
+- `name`: Full name
+- `image`: Path to photo (e.g., `/static/img/members/lastname.jpg`)
+- `position`: Job title
+
+### Optional Fields
+
+- `email`: Email address
+- `scholar`: Google Scholar ID
+- `twitter`: Twitter handle
+- `orcid`: ORCID identifier
+- `github`: GitHub username
+- `description`: Biography (use single quotes for multi-line)
+
+## Adding Publications
+
+1. **Add publication info** to `_data/publications.yml`
+2. **Prepare teaser image**: Max 200px height, JPEG, max 100KB
+3. **Save files**:
+   - Image: `/static/pub/paper_id.jpg`
+   - BibTeX: `/static/pub/paper_id.bib`
+   - PDF (optional): `/static/pub/paper_id.pdf`
+4. **Use the template** from `_templates/publication-template.md`
+
+### Required Fields
+
+- `id`: Unique identifier (usually `lastname_year`)
+- `authors`: Author list (bold lab members: `**Name**`)
+- `title`: Paper title
+- `journal`: Journal/conference name
+- `type`: One of: journal, conference, workshop, abstract, poster, preprint
+- `year`: Publication year
+
+### Recommended Fields
+
+- `doi`: Digital Object Identifier
+- `image`: Teaser image path
+- `bibtex`: BibTeX file path
+- `pdf`: Link to open access PDF or local file
+
+## Validation Before Committing
+
+Always validate your changes before committing:
+
+```bash
+# Validate YAML files
+./scripts/validate_yaml.rb
+
+# Validate post filenames and format
+./scripts/validate_posts.sh
+
+# Test the site locally
+bundle exec jekyll serve
+```
+
+Visit http://localhost:4000 to preview your changes.
+
+## Automation Tools
+
+### Image Optimization
+
+Optimize images to meet size requirements:
+
+```bash
+# Optimize a single member photo (365x365, 72 DPI)
+./scripts/optimize_images.sh member static/img/members/lastname.jpg
+
+# Optimize a single publication teaser (max 200px height, max 100KB)
+./scripts/optimize_images.sh pub static/pub/paper_id.jpg
+
+# Optimize all member photos at once
+./scripts/optimize_images.sh all-members
+
+# Optimize all publication teasers at once
+./scripts/optimize_images.sh all-pubs
+```
+
+**Requirements**: ImageMagick
+
+**Installation**:
+- macOS: `brew install imagemagick`
+- Ubuntu/Debian: `sudo apt-get install imagemagick`
+- Fedora/RHEL: `sudo yum install imagemagick` or `sudo dnf install imagemagick`
+- Arch Linux: `sudo pacman -S imagemagick`
+- Windows: Download from [imagemagick.org](https://imagemagick.org/script/download.php#windows) or use `choco install imagemagick`
+
+### Pre-commit Hook
+
+Install a pre-commit hook to automatically validate changes:
+
+```bash
+cp scripts/pre-commit.sh .git/hooks/pre-commit
+chmod +x .git/hooks/pre-commit
+```
+
+This will automatically run validation scripts before each commit.
+
+## Local Development
+
+### First-Time Setup
+
+```bash
+# Install bundler (without sudo)
+gem install bundler --user-install
+
+# Install dependencies
+bundle install
+```
+
+### Running Locally
+
+```bash
+# Start development server
+bundle exec jekyll serve
+
+# Site available at: http://localhost:4000
+```
+
+### Testing
+
+```bash
+# Build site
+bundle exec jekyll build
+
+# Check for broken links
+bundle exec htmlproofer ./_site --disable-external
+```
+
+## Style Guidelines
+
+### Writing
+
+- Use clear, concise language
+- Check spelling and grammar
+- Use proper citations for published work
+
+### Images
+
+- Optimize images before uploading
+- Use descriptive filenames
+- Keep file sizes small:
+  - Member photos: max 100KB
+  - Publication teasers: max 100KB
+  - Post images: max 500KB
+
+### Code
+
+- Follow Jekyll conventions
+- Keep YAML files properly indented (2 spaces)
+- Use single quotes for strings in YAML
+- Escape single quotes with double single quotes: `Alzheimer''s`
+
+## Questions?
+
+If you have questions or run into issues, please:
+1. Check the templates in `_templates/`
+2. Review existing examples in the data files
+3. Contact the lab's web administrator
+
+## Continuous Integration
+
+All pull requests are automatically tested using GitHub Actions:
+- Jekyll build verification
+- HTML validation
+- Link checking
+
+Make sure your changes pass these tests before requesting review.
+
+

Gemfile

@@ -1,6 +1,12 @@
 source 'https://rubygems.org'
-gem "jekyll"
+
+# Specify Ruby version for consistency
+ruby '>= 2.7.0'
+
+# GitHub Pages gem (includes Jekyll and plugins used by GitHub Pages)
 gem 'github-pages'
-gem 'jekyll-paginate'
+# HTML validation and link checking for CI/CD
 gem "html-proofer"
+
+# Required for Ruby 3.x to run Jekyll server
 gem "webrick"