v3.0.0

This version of PhageFilter includes several new features:
Non-backward Compatible

1. Comprehensive benchmarking pipeline for automated functional testing.
2. Being able to use tree directories in different locations.
3. Ability to add genomes to an already built tree.

v2.0.0

This version of PhageFilter contains:

• NEW version (v2.0.0; adhering to semantic versioning. commands undergoing significant changes)
• (Memory performance) A read buffer to prevent reading genomes/reads into memory all at once
• (Memory performance) A bloom filter cache. We have a trait for caches, but here we added an LRU cache.
• Automated coverage reporting

v1.2.0

This version of PhageFilter contains:

1. Performance optimization (time + memory).
2. An updated benchmarking suite.
3. Updated examples sets.

v1.1.0

• Uses a sequence bloom tree for queries
• Performs read mapping to genomes
• Multiple genomes may get the same read assigned - beneficial in the case there are duplicates
• FxHasher is used for hashing the genomes/reads kmers

v1.0.0

This version performs read filtering for phage genomes