Skip to content
Open
Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
92 commits
Select commit Hold shift + click to select a range
f5d8374
search library integration
theisuru Jun 25, 2025
3ee4054
Merge branch 'dev' into biosamples-search
theisuru Jun 25, 2025
022894f
extract solr search service
theisuru Jun 26, 2025
37bde6b
feat: es integration
theisuru Jun 30, 2025
7f60e8c
reindex runnder, and MessageConfig changes before moving to ES
theisuru Jul 7, 2025
0dd52ed
merge with dev
theisuru Jul 29, 2025
78b94a8
facet integration partial
theisuru Aug 8, 2025
2b5ffb3
feat: biosamples-search integration with working test cases
theisuru Aug 20, 2025
9bad543
feat: helm deployment
theisuru Sep 2, 2025
bd9db04
fix: deployment
theisuru Sep 2, 2025
081b423
fix: deployment
theisuru Sep 3, 2025
45a9296
test: deployment
theisuru Sep 3, 2025
037bf2e
test: remove livenss probe for testing
theisuru Sep 5, 2025
8fa4420
test: remove livenss probe for testing
theisuru Sep 5, 2025
004a154
test: remove livenss probe for testing
theisuru Sep 5, 2025
8ddbfb9
fix: search port from env
theisuru Sep 5, 2025
f1e302b
test: deployment with search
theisuru Sep 5, 2025
d0d5287
test: multi stage docker build
theisuru Sep 9, 2025
d3eb2f7
test: build images
theisuru Sep 9, 2025
4ce91e7
test: multi stage docker build
theisuru Sep 9, 2025
7ec8188
test: gitlab
theisuru Sep 12, 2025
21a00e7
test: gitlab
theisuru Sep 12, 2025
7e1eb9b
test: gitlab
theisuru Sep 12, 2025
fa64074
test: gitlab
theisuru Sep 16, 2025
f8eb51b
test: gitlab
theisuru Sep 16, 2025
50e9b47
test: gitlab
theisuru Sep 16, 2025
528d563
test: gitlab
theisuru Sep 16, 2025
6f8c6ef
merge with main
theisuru Sep 16, 2025
004c4db
fix: spring dependency resolution problem with re-index pipeline
theisuru Sep 17, 2025
9b5bd0a
test: gitlab
theisuru Sep 17, 2025
6e49c73
feat: k8s rabbit config
theisuru Sep 29, 2025
5b8b095
test: deployment
theisuru Sep 29, 2025
16a841b
chore: cronjob k8s config
theisuru Oct 9, 2025
791d9d7
deployment: expose service as nodeport
theisuru Oct 21, 2025
c5eb8b9
deploy: ci file error fix
theisuru Oct 21, 2025
54c5ab1
fix: context path issue
theisuru Oct 22, 2025
28db79f
fix: context path for v2
theisuru Oct 22, 2025
153829a
fix: schema service url changes for k8s deployment
theisuru Oct 23, 2025
e3c2d20
fix: schema store url property
theisuru Oct 23, 2025
748748d
fix: context path
theisuru Oct 24, 2025
7b9b81c
fix: context path
theisuru Oct 24, 2025
a0eac02
chore: approximate facet count message
theisuru Oct 27, 2025
43e343a
chore: merge dev
theisuru Oct 28, 2025
f714773
chore: cleanup vm based cicd pipelines
theisuru Oct 28, 2025
fb0808d
chore: improve version update script to cleanup files
theisuru Oct 28, 2025
2cfd918
Merge branch 'dev' into biosamples-search
theisuru Nov 3, 2025
1c5b73e
fix: uploadworkers cicd config naming issue
theisuru Nov 3, 2025
99f7444
fix: uploadworkers cicd config naming issue
theisuru Nov 3, 2025
fd955b4
fix: remove rabbit message conversion extra quotes
theisuru Nov 3, 2025
d58e0fa
feat: cicd application.properties
theisuru Nov 11, 2025
63fb339
feat: cicd application.properties
theisuru Nov 11, 2025
0c35d12
feat: cicd application.properties
theisuru Nov 11, 2025
0ee2fc2
test: deployment
theisuru Nov 13, 2025
5fcf4aa
test: deployment
theisuru Nov 13, 2025
9b9b92c
fix: NCBI pipeline rest template
theisuru Nov 17, 2025
105c55f
fix: file upload validaiton error
theisuru Nov 17, 2025
988afce
test: argo workflow cicd
theisuru Nov 21, 2025
c839054
test: argo workflow cicd
theisuru Nov 21, 2025
056f04d
test: argo workflow cicd
theisuru Nov 21, 2025
5bdafcf
test: argo workflow cicd
theisuru Nov 21, 2025
478ceb0
test: argo workflow cicd
theisuru Nov 21, 2025
7b317ea
test: argo workflow cicd
theisuru Nov 21, 2025
1fc7778
test: argo workflow cicd
theisuru Nov 21, 2025
94df991
test: argo workflow cicd
theisuru Nov 24, 2025
1c3d7b9
test: argo workflow cicd
theisuru Nov 24, 2025
c7d3063
test: argo workflow cicd
theisuru Nov 24, 2025
867034c
test: argo workflow cicd
theisuru Nov 24, 2025
bc5b244
test: argo workflow cicd
theisuru Nov 24, 2025
d053283
test: argo workflow cicd
theisuru Dec 1, 2025
0d1023d
test: argo workflow cicd
theisuru Dec 1, 2025
a2b45e3
test: argo workflow cicd
theisuru Dec 1, 2025
3c75dac
test: argo workflow cicd
theisuru Dec 1, 2025
a2a7d31
test: argo workflow cicd
theisuru Dec 1, 2025
0376dab
test: argo workflow cicd
theisuru Dec 3, 2025
c2f8fff
test: argo workflow cicd
theisuru Dec 4, 2025
73f5bfd
test: argo workflow cicd
theisuru Dec 4, 2025
4f6a3b2
test: pipelines dag
theisuru Dec 8, 2025
41e3e71
test: argo dag
theisuru Dec 10, 2025
316aba9
chore: add search repo image building step to readme
theisuru Dec 11, 2025
ae667ed
chore: add .env file with local docker config
theisuru Dec 11, 2025
c33469f
test: argo dag
theisuru Dec 11, 2025
0aecfbb
logback added and spotless
dipayan1985 Dec 11, 2025
796a64b
Merge remote-tracking branch 'origin/biosamples-search' into biosampl…
dipayan1985 Dec 11, 2025
720d220
feat: pipeline read last run from database
theisuru Dec 12, 2025
b057679
Merge branch 'biosamples-search' of github.com:EBIBioSamples/biosampl…
theisuru Dec 12, 2025
592a1e1
fix: repo config for pipelines
theisuru Dec 12, 2025
3b99b74
fix: repo config for pipelines
theisuru Dec 12, 2025
17ee4f1
fix: repo config for pipelines
theisuru Dec 12, 2025
c576bcd
fix: add until date filter, save last completed date
theisuru Dec 12, 2025
2cf1296
test: argo service account
theisuru Dec 12, 2025
0dc29f7
reindex running required for fresh prod index.
dipayan1985 Dec 15, 2025
ac4dd36
spotless code
dipayan1985 Dec 15, 2025
File filter

Filter by extension

Filter by extension


Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
9 changes: 9 additions & 0 deletions .env
Original file line number Diff line number Diff line change
@@ -0,0 +1,9 @@
ELASTIC_PASSWORD=elastic
KIBANA_PASSWORD=kibana
STACK_VERSION=8.17.2
CLUSTER_NAME=docker-cluster
LICENSE=basic
ES_PORT=9200
KIBANA_PORT=5601
# Increase or decrease based on the available host memory (in bytes)
MEM_LIMIT=1073741824
2 changes: 2 additions & 0 deletions .gitignore
Original file line number Diff line number Diff line change
Expand Up @@ -11,6 +11,8 @@ docker-compose.debug.override.yml
bin/
target/
export/
temp/
set_java_17.sh

# Scripts
docker-env.sh
Expand Down
Loading