Make repos clone from JCSDA-internal

[mranst]

Closes #108. Fixes bug related to checking for existence of commit. Changes build order so that commits will clone from JCSDA-internal first

[rtodling]

@Dooruk @mranst @mathomp4 I will say there now even more problems ... no w/ the changes above (I can test them yet).

I am following the bundle instructions to build on discover ... the first item is:

module purge
/home/rtodling% source /discover/nobackup/projects/gmao/advda/swell/jedi_modules/spackstack_1.9_intel_bundle

and this the error I get:

Bad : modifier in $ '-'.

What's going on?!

[mranst]

I am following the bundle instructions to build on discover ... the first item is:

module purge /home/rtodling% source /discover/nobackup/projects/gmao/advda/swell/jedi_modules/spackstack_1.9_intel_bundle

Try this:

module purge
source /discover/nobackup/projects/gmao/advda/swell/jedi_modules/spackstack_1.9_intel

(No "bundle" at the end)

That's the one we use for swell, I've never used the other one before. I can fix that in the docs here

[rtodling]

I am following the bundle instructions to build on discover ... the first item is:
module purge /home/rtodling% source /discover/nobackup/projects/gmao/advda/swell/jedi_modules/spackstack_1.9_intel_bundle

Try this:

module purge
source /discover/nobackup/projects/gmao/advda/swell/jedi_modules/spackstack_1.9_intel

(No "bundle" at the end)

That's the one we use for swell, I've never used the other one before. I can fix that in the docs here

Ok @mranst thanks ... but if the one in the documentation doesn't work perhaps we need to update the doc.

[rtodling]

I hope this works ... but it's really not simple to test jedi_bundle ...