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1. gzhoffie.github.io gzhoffie.github.io Public

   Github Pages that stages my current work.

   CSS 1

2. VE401-recitation-class VE401-recitation-class Public

   Interactive Mathematica notebooks illustrating the course content of VE401, Probabilistic Methods in Engineering at UM-SJTU Joint Institute.

   Mathematica 14 1

3. independence-in-streams independence-in-streams Public

   This repository contains code for identifying correlation in a stream of samples. The sketching of sketches algorithm and the counter matrix algorithm are implemented and benchmarked.

   Jupyter Notebook 5

4. bucket-map bucket-map Public

   Implementation of BucketMap, a novel cache-efficient, bit-parallel and alignment-free short read mapping algorithm.

   C++ 5

5. bbs bbs Public

   [RECOMB-seq '25] Code repository for the paper "Efficient Trace Reconstruction for DNA Data Storage Systems using Bidirectional Beam Search"

   C++ 4

6. skiver skiver Public

   Source code for the paper "Skiver: Alignment-free Estimation of Sequencing Error Rates and Spectra using (k, v)-mer Sketches"

   Rust