Cellposeindocker#171

Merged

jshleap merged 31 commits into

mainfrom

cellposeindocker

Jul 13, 2026

Commits on Jul 8, 2026

refactor Dockerfile for efficiency, multi-layer caching, and versioning
jshleap
committed
yadd docker.mk preflight and fix version injection via SCM_VERSION build-arg
jshleap
committed
docker.mk: auto-install setuptools_scm if missing, check buildx prereq
jshleap
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docker.mk: use uv for setuptools_scm (auto-install uv if missing, --no-project to avoid TF resolution)
jshleap
committed
docker.mk: sanitize Docker tag by replacing + with - (PEP 440 local versions are invalid in Docker tag format)
jshleap
committed
Dockerfile: replace multiline python3 -c block with sed (fixed Dockerfile parse error on bare lines)
jshleap
committed
fix version injection in Docker image; add --version flag to CLI
jshleap
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fix torch SSL HandshakeFailure on Linux; robust docker.mk version detection
jshleap
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remove separate torch install step that broke SSL on restricted networks
jshleap
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fix version display: replace fragile python3 one-liner with sed
jshleap
committed
refactor Dockerfile for efficiency, multi-layer caching, and versioning
jshleap
committed
drop napari/pytest, fix version injection, remove NVIDIA apt repos
jshleap
committed
add docker.mk preflight and fix version injection via SCM_VERSION build-arg
jshleap
committed
docker.mk: auto-install setuptools_scm if missing, check buildx prereq
jshleap
committed
docker.mk: use uv for setuptools_scm (auto-install uv if missing, --no-project to avoid TF resolution)
jshleap
committed
docker.mk: sanitize Docker tag by replacing + with - (PEP 440 local versions are invalid in Docker tag format)
jshleap
committed
Dockerfile: replace multiline python3 -c block with sed (fixed Dockerfile parse error on bare lines)
jshleap
committed
fix version injection in Docker image; add --version flag to CLI
jshleap
committed
fix torch SSL HandshakeFailure on Linux; robust docker.mk version detection
jshleap
committed
remove separate torch install step that broke SSL on restricted networks
jshleap
committed
fix version display: replace fragile python3 one-liner with sed
jshleap
committed
fixing some stragglers
jshleap
committed
adding back isolation for scm to work
jshleap
committed
[pre-commit.ci] auto fixes from pre-commit.com hooks

pre-commit-ci[bot]
authored and
jshleap
committed
fix apt SSL errors: remove unused NVIDIA and deadsnakes PPA repos
jshleap
committed
docs: add Docker and GPU usage section to install.rst
jshleap
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docs: clarify TF GPU affects segment command (StarDist backend)
jshleap
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suppress compileall SyntaxError noise; warn when SCM_VERSION not set
jshleap
committed
fix compileall: redirect both stdout and stderr to silence py312 error
jshleap
committed

Commits on Jul 13, 2026