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Initial implementation of workr#59

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Initial implementation of workr#59
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github-actions Bot commented May 1, 2026

🌐 PR pkgdown deployed: https://Gilead-BioStats.github.io/gsm.reporting/pr/59/dev

Last updated: 2026-05-01T19:57:35.631Z

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github-actions Bot commented May 1, 2026

{qcthat} Report: User Acceptance

No issues are awaiting UAT.

This report was generated by this GitHub Actions run.

Last updated: 2026-05-01 19:58:03 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.6.0 (2026-04-24)

os Ubuntu 24.04.4 LTS

system x86_64, linux-gnu

ui X11

language (EN)

collate C.UTF-8

ctype C.UTF-8

tz UTC

date 2026-05-01

pandoc 3.1.3 @ /usr/bin/pandoc

quarto NA

─ Packages ───────────────────────────────────────────────────────────────────

package * version date (UTC) lib source

askpass 1.2.1 2024-10-04 [1] RSPM

astgrepr 0.1.1 2025-06-07 [1] RSPM

backports 1.5.1 2026-04-03 [1] RSPM

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blob 1.3.0 2026-01-14 [1] RSPM

boot 1.3-32 2025-08-29 [3] CRAN (R 4.6.0)

brio 1.1.5 2024-04-24 [1] RSPM

bslib 0.10.0 2026-01-26 [1] RSPM

cachem 1.1.0 2024-05-16 [1] RSPM

callr 3.7.6 2024-03-25 [1] RSPM

checkmate 2.3.4 2026-02-03 [1] RSPM

class 7.3-23 2025-01-01 [3] CRAN (R 4.6.0)

cli 3.6.6 2026-04-09 [1] RSPM

clipr 0.8.0 2022-02-22 [1] RSPM

cluster 2.1.8.2 2026-02-05 [3] CRAN (R 4.6.0)

codetools 0.2-20 2024-03-31 [3] CRAN (R 4.6.0)

commonmark 2.0.0 2025-07-07 [1] RSPM

compiler 4.6.0 2026-04-24 [3] local

covr 3.6.5 2025-11-09 [1] RSPM

crayon 1.5.3 2024-06-20 [1] RSPM

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dbplyr 2.5.2 2026-02-13 [1] RSPM

desc 1.4.3 2023-12-10 [1] RSPM

diffobj 0.3.6 2025-04-21 [1] RSPM

digest 0.6.39 2025-11-19 [1] RSPM

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duckdb 1.5.2 2026-04-13 [1] RSPM

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farver 2.1.2 2024-05-13 [1] RSPM

fastmap 1.2.0 2024-05-15 [1] RSPM

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fs 2.1.0 2026-04-18 [1] RSPM

generics 0.1.4 2025-05-09 [1] RSPM

gert 2.3.1 2026-01-11 [1] RSPM

ggplot2 4.0.3 2026-04-22 [1] RSPM

gh 1.5.0 2025-05-26 [1] RSPM

git2r 0.36.2 2025-03-29 [1] RSPM

gitcreds 0.1.2 2022-09-08 [1] RSPM

glue 1.8.1 2026-04-17 [1] RSPM

graphics * 4.6.0 2026-04-24 [3] local

grDevices * 4.6.0 2026-04-24 [3] local

grid 4.6.0 2026-04-24 [3] local

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gsm.kri 1.5.0 2026-05-01 [1] Github (Gilead-BioStats/gsm.kri@9dcd429)

gsm.mapping 1.1.3 2026-05-01 [1] Github (Gilead-BioStats/gsm.mapping@9332067)

gsm.reporting 1.1.4 2026-05-01 [1] local

gt 1.3.0 2026-01-22 [1] RSPM

gtable 0.3.6 2024-10-25 [1] RSPM

highr 0.12 2026-03-06 [1] RSPM

htmltools 0.5.9 2025-12-04 [1] RSPM

htmlwidgets 1.6.4 2023-12-06 [1] RSPM

httr 1.4.8 2026-02-13 [1] RSPM

httr2 1.2.2 2025-12-08 [1] RSPM

ini 0.3.1 2018-05-20 [1] RSPM

isoband 0.3.0 2025-12-07 [1] RSPM

jquerylib 0.1.4 2021-04-26 [1] RSPM

jsonlite 2.0.0 2025-03-27 [1] RSPM

juicyjuice 0.1.0 2022-11-10 [1] RSPM

KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.6.0)

knitr 1.51 2025-12-20 [1] RSPM

labeling 0.4.3 2023-08-29 [1] RSPM

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lifecycle 1.0.5 2026-01-08 [1] RSPM

litedown 0.9 2025-12-18 [1] RSPM

log4r 0.4.4 2024-10-12 [1] RSPM

magrittr 2.0.5 2026-04-04 [1] RSPM

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mime 0.13 2025-03-17 [1] RSPM

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nnet 7.3-20 2025-01-01 [3] CRAN (R 4.6.0)

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otel 0.2.0 2025-08-29 [1] RSPM

pak 0.9.5 2026-04-27 [2] local

parallel 4.6.0 2026-04-24 [3] local

pillar 1.11.1 2025-09-17 [1] RSPM

pkgbuild 1.4.8 2025-05-26 [1] RSPM

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purrr 1.2.2 2026-04-10 [1] RSPM

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rrapply 1.2.8 2025-11-25 [1] RSPM

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[1] /home/runner/work/_temp/Library

[2] /opt/R/4.6.0/lib/R/site-library

[3] /opt/R/4.6.0/lib/R/library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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github-actions Bot commented May 1, 2026

{qcthat} Reports

PR-Associated Issues

█ A qcthat issue test matrix with 0 milestones, 0 issues, and 0 tests
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped

Completed Issues

✅ A qcthat issue test matrix with 2 milestones, 8 issues, and 10 tests
├─█─Milestone: v1.1.0 (3 issues, 3 tests)
│ ├─☑️─Issue 35: Feature: rename results$prevSnapshotDate to results$SnapshotDate_Previous
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ ├─☑️─Issue 31: Feature: Add attribute deltas to `dfResults`
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ └─☑️─Requirement 30: Business Requirement: Add deltas in risk signal logic
│   ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│   ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
├─█─Milestone: v1.1.4 (1 issue, 2 tests)
│ └─☑️─Technical Task 50: Migrate appropriate qualification tests to gsm.reporting
│   ├─✅─Qual: Given summarized analytics data, a properly specified reporting workflow creates cross-sectional results data set with one record per metric per group  (#50)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
└─█─Milestone: <none> (4 issues, 8 tests)
  ├─☑️─Issue 41: QC: update makebounds test snapshot with new gsm.core data
  │ ├─✅─MakeBounds makes dfBounds (#41, #42)
  │ ├─✅─MakeBounds uses user-supplied strMetrics (#41)
  │ └─✅─MakeBounds makes poisson dfBounds (#41)
  ├─☑️─Issue 25: Bugfix: `MakeBounds` should exit gracefully if a mismatch between metric IDs in `results` and `metrics` is detected.
  │ └─✅─MakeBounds has appropriate expected warnings (#25)
  ├─☑️─Issue 24: Feature: `BindResults()` in its preexisting workflow yaml does not have a parameter for SnapshotDate
  │ ├─✅─BindResults binds dfs in lAnalysis (#24)
  │ └─✅─BindResults binds dfs in lAnalysis$lData (#24)
  └─☑️─Issue 6: Add change from previous snapshot.
    ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
    └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

🟢 All issues have at least one test

🙈 12 issues with label "qcthat-nocov" were ignored


This report was generated by this GitHub Actions run.

Last updated: 2026-05-01 19:58:04 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.6.0 (2026-04-24)

os Ubuntu 24.04.4 LTS

system x86_64, linux-gnu

ui X11

language (EN)

collate C.UTF-8

ctype C.UTF-8

tz UTC

date 2026-05-01

pandoc 3.1.3 @ /usr/bin/pandoc

quarto NA

─ Packages ───────────────────────────────────────────────────────────────────

package * version date (UTC) lib source

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astgrepr 0.1.1 2025-06-07 [1] RSPM

backports 1.5.1 2026-04-03 [1] RSPM

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bigD 0.3.1 2025-04-03 [1] RSPM

bitops 1.0-9 2024-10-03 [1] RSPM

blob 1.3.0 2026-01-14 [1] RSPM

boot 1.3-32 2025-08-29 [3] CRAN (R 4.6.0)

brio 1.1.5 2024-04-24 [1] RSPM

bslib 0.10.0 2026-01-26 [1] RSPM

cachem 1.1.0 2024-05-16 [1] RSPM

callr 3.7.6 2024-03-25 [1] RSPM

checkmate 2.3.4 2026-02-03 [1] RSPM

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cli 3.6.6 2026-04-09 [1] RSPM

clipr 0.8.0 2022-02-22 [1] RSPM

cluster 2.1.8.2 2026-02-05 [3] CRAN (R 4.6.0)

codetools 0.2-20 2024-03-31 [3] CRAN (R 4.6.0)

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ps 1.9.3 2026-04-20 [1] RSPM

purrr 1.2.2 2026-04-10 [1] RSPM

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Rcpp 1.1.1-1.1 2026-04-24 [1] RSPM

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reactR 0.6.1 2024-09-14 [1] RSPM

rex 1.2.2 2026-03-28 [1] RSPM

rlang 1.2.0 2026-04-06 [1] RSPM

rmarkdown 2.31 2026-03-26 [1] RSPM

rpart 4.1.27 2026-03-27 [3] CRAN (R 4.6.0)

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rrapply 1.2.8 2025-11-25 [1] RSPM

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sass 0.4.10 2025-04-11 [1] RSPM

scales 1.4.0 2025-04-24 [1] RSPM

sessioninfo 1.2.3 2025-02-05 [1] any (@1.2.3)

spatial 7.3-18 2025-01-01 [3] CRAN (R 4.6.0)

splines 4.6.0 2026-04-24 [3] local

stats * 4.6.0 2026-04-24 [3] local

stats4 4.6.0 2026-04-24 [3] local

stringi 1.8.7 2025-03-27 [1] RSPM

stringr 1.6.0 2025-11-04 [1] RSPM

survival 3.8-6 2026-01-16 [3] CRAN (R 4.6.0)

sys 3.4.3 2024-10-04 [1] RSPM

tcltk 4.6.0 2026-04-24 [3] local

testthat 3.3.2 2026-01-11 [1] RSPM

tibble 3.3.1 2026-01-11 [1] RSPM

tidyr 1.3.2 2025-12-19 [1] RSPM

tidyselect 1.2.1 2024-03-11 [1] RSPM

tinytex 0.59 2026-03-28 [1] RSPM

tools 4.6.0 2026-04-24 [3] local

usethis 3.2.1 2025-09-06 [1] RSPM

utf8 1.2.6 2025-06-08 [1] RSPM

utils * 4.6.0 2026-04-24 [3] local

V8 8.2.0 2026-04-21 [1] RSPM

vctrs 0.7.3 2026-04-11 [1] RSPM

viridisLite 0.4.3 2026-02-04 [1] RSPM

waldo 0.6.2 2025-07-11 [1] RSPM

whisker 0.4.1 2022-12-05 [1] RSPM

withr 3.0.2 2024-10-28 [1] RSPM

workr 1.0.0 2026-05-01 [1] Github (Gilead-BioStats/workr@eb89f14)

xfun 0.57 2026-03-20 [1] RSPM

xml2 1.5.2 2026-01-17 [1] RSPM

xopen 1.0.1 2024-04-25 [1] RSPM

yaml 2.3.12 2025-12-10 [1] RSPM

zip 2.3.3 2025-05-13 [1] RSPM

[1] /home/runner/work/_temp/Library

[2] /opt/R/4.6.0/lib/R/site-library

[3] /opt/R/4.6.0/lib/R/library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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