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Main -> dev#61
Laura Maxwell (lauramaxwell) wants to merge 3 commits into
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@lauramaxwell Laura Maxwell (lauramaxwell) commented May 15, 2026

catch up dev to the latest release on main

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github-actions Bot commented May 15, 2026

✅ All workflows are up to date

Generated by this GitHub Action. Updated: 2026-05-15T14:58:29Z

jharmon-gilead
Jon Harmon (jharmon-gilead) approved these changes May 15, 2026
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LGTM!

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github-actions Bot commented May 15, 2026

📊 Test coverage: 87.70%

Per-file coverage
File Coverage
R/BindResults.R 100%
R/CalculateChange.R 72%
R/MakeBounds.R 96.2%
R/MakeMetric.R 100%

Generated by this GitHub Action. Updated: 2026-05-15T15:01:45Z

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github-actions Bot commented May 15, 2026

{qcthat} Report: User Acceptance

No issues are awaiting UAT.

This report was generated by this GitHub Actions run.

Last updated: 2026-05-15 15:01:59 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.6.0 (2026-04-24)

os Ubuntu 24.04.4 LTS

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language (EN)

collate C.UTF-8

ctype C.UTF-8

tz UTC

date 2026-05-15

pandoc 3.1.3 @ /usr/bin/pandoc

quarto NA

─ Packages ───────────────────────────────────────────────────────────────────

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backports 1.5.1 2026-04-03 [1] RSPM

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[1] /home/runner/work/_temp/Library

[2] /opt/R/4.6.0/lib/R/site-library

[3] /opt/R/4.6.0/lib/R/library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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github-actions Bot commented May 15, 2026

{qcthat} Reports

PR-Associated Issues

█ A qcthat issue test matrix with 0 milestones, 0 issues, and 0 tests 
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped

Completed Issues

✅ A qcthat issue test matrix with 2 milestones, 8 issues, and 10 tests 
├─█─Milestone: v1.1.0 (3 issues, 3 tests)
│ ├─☑️─Issue 35: Feature: rename results$prevSnapshotDate to results$SnapshotDate_Previous
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ ├─☑️─Issue 31: Feature: Add attribute deltas to `dfResults`
│ │ ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│ │ ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│ │ └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
│ └─☑️─Requirement 30: Business Requirement: Add deltas in risk signal logic
│   ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
│   ├─✅─[ CalculateChange ] returns message and dfResults unchanged if dfPrevious not supplied. (#31, #30)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
├─█─Milestone: v1.1.4 (1 issue, 2 tests)
│ └─☑️─Technical Task 50: Migrate appropriate qualification tests to gsm.reporting
│   ├─✅─Qual: Given summarized analytics data, a properly specified reporting workflow creates cross-sectional results data set with one record per metric per group  (#50)
│   └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
└─█─Milestone: <none> (4 issues, 8 tests)
  ├─☑️─Issue 41: QC: update makebounds test snapshot with new gsm.core data
  │ ├─✅─MakeBounds makes dfBounds (#41, #42)
  │ ├─✅─MakeBounds uses user-supplied strMetrics (#41)
  │ └─✅─MakeBounds makes poisson dfBounds (#41)
  ├─☑️─Issue 25: Bugfix: `MakeBounds` should exit gracefully if a mismatch between metric IDs in `results` and `metrics` is detected.
  │ └─✅─MakeBounds has appropriate expected warnings (#25)
  ├─☑️─Issue 24: Feature: `BindResults()` in its preexisting workflow yaml does not have a parameter for SnapshotDate
  │ ├─✅─BindResults binds dfs in lAnalysis (#24)
  │ └─✅─BindResults binds dfs in lAnalysis$lData (#24)
  └─☑️─Issue 6: Add change from previous snapshot.
    ├─✅─[ CalculateChange ] correctly calculates change from the previous snapshot. (#6, #30, #31, #35)
    └─✅─Qual: Given summarized analytics data and historical reporting results data, a properly specified reporting workflow creates cross-sectional results data set including changes from previous snapshot with one record per metric per group (#6, #30, #31, #35, #50)
# Issue state: 📥 = open, ☑️ = closed (completed), ⛔ = closed (won't fix)
# Test disposition: ✅ = passed, ❌ = failed, 🚫 = skipped
✅ All tests passed

🟢 All issues have at least one test

🙈 13 issues with label "qcthat-nocov" were ignored

This report was generated by this GitHub Actions run.

Last updated: 2026-05-15 15:02:01 UTC

Session Info ─ Session info ───────────────────────────────────────────────────────────────

setting value

version R version 4.6.0 (2026-04-24)

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─ Packages ───────────────────────────────────────────────────────────────────

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gsm.mapping 1.1.4 2026-05-15 [1] Github (Gilead-BioStats/gsm.mapping@060720e)

gsm.reporting 1.1.5 2026-05-15 [1] local

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gtable 0.3.6 2024-10-25 [1] RSPM

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rlang 1.2.0 2026-04-06 [1] RSPM

rmarkdown 2.31 2026-03-26 [1] RSPM

rpart 4.1.27 2026-03-27 [3] CRAN (R 4.6.0)

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sessioninfo 1.2.3 2025-02-05 [1] any (@1.2.3)

spatial 7.3-18 2025-01-01 [3] CRAN (R 4.6.0)

splines 4.6.0 2026-04-24 [3] local

stats * 4.6.0 2026-04-24 [3] local

stats4 4.6.0 2026-04-24 [3] local

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stringr 1.6.0 2025-11-04 [1] RSPM

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yaml 2.3.12 2025-12-10 [1] RSPM

zip 2.3.3 2025-05-13 [1] RSPM

[1] /home/runner/work/_temp/Library

[2] /opt/R/4.6.0/lib/R/site-library

[3] /opt/R/4.6.0/lib/R/library

  • ── Packages attached to the search path.

──────────────────────────────────────────────────────────────────────────────

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github-actions Bot commented May 15, 2026

🌐 PR pkgdown deployed: https://Gilead-BioStats.github.io/gsm.reporting/pr/61/dev

Generated by this GitHub Action. Updated: 2026-05-15T15:02:11Z

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@jharmon-gilead Jon Harmon (jharmon-gilead) jharmon-gilead approved these changes

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@lauramaxwell @jharmon-gilead @jonthegeek