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Non-deterministic graphs from identical inputs: extraction lacks seed/prompt-override controls and extract_corpus_parallel ignores extraction-spec

Status: Open.

#1695 In Graphify-Labs/graphify;

· reeve-c opened on Jul 6, 2026

cluster-only/label never track token/cost usage from community-labeling LLM calls — tokens = {"input": 0, "output": 0} is a hardcoded placeholder, not an accumulator

Status: Open.

#1694 In Graphify-Labs/graphify;

· sub4biz opened on Jul 6, 2026

AST extraction progress line's final "100%" silently switches denominator (total_files instead of len(uncached_work)) — looks like the file count changed mid-run

Status: Open.

#1693 In Graphify-Labs/graphify;

· sub4biz opened on Jul 6, 2026

Dockerfile/Gemfile/Makefile/Rakefile/LICENSE and other extensionless, non-shebang project files currently produce no visible trace in graphify's output — not classified, not counted anywhere

Status: Open.

#1692 In Graphify-Labs/graphify;

· sub4biz opened on Jul 6, 2026

cluster-only labels fails: Expecting value: line 1 column 6 (char 5)

Status: Open.

#1690 In Graphify-Labs/graphify;

· vdgbcrypto opened on Jul 6, 2026

R (.r/.R) listed in CODE_EXTENSIONS but has no AST extractor — silently drops all R files with zero warning

Status: Open.

#1689 In Graphify-Labs/graphify;

· Sneakypeat opened on Jul 5, 2026

install --project / claude install deletes CLAUDE.md content between a stray ## graphify match and the next heading (data loss)

Status: Open.

#1688 In Graphify-Labs/graphify;

· bdfinst opened on Jul 5, 2026

Feature: recursive update command for monorepo/workspace layouts

Status: Open.

#1687 In Graphify-Labs/graphify;

· divy-piyushm opened on Jul 5, 2026

extract: hung Ollama request stalls the whole run indefinitely despite --api-timeout

Status: Open.

#1686 In Graphify-Labs/graphify;

· Kyzcreig opened on Jul 5, 2026

extract: tiktoken special-token in a doc file (<|endoftext|>) crashes the entire semantic pass

Status: Open.

#1685 In Graphify-Labs/graphify;

· Kyzcreig opened on Jul 5, 2026

PHP: member/instance method calls never resolve to calls edges — only static Class::method() works

Status: Open.

#1682 In Graphify-Labs/graphify;

· distribuidornexvia opened on Jul 5, 2026

skill.md usage example contradicts opt-in --obsidian behavior

Status: Open.

#1681 In Graphify-Labs/graphify;

· junny-l opened on Jul 5, 2026