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@Helix-Research-Lab

Helix Research Lab

Helix Research Lab under Professor Russ Altman at Stanford University

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  1. Pool_PaRTI Pool_PaRTI Public

    Pooling by PageRank Token Importance. This is a weighted average pooling method where the weights are derived from the internal attention matrices of the encoder.

    Jupyter Notebook 19 4

  2. PGxPOP PGxPOP Public

    PGxPOP

    Python 18 2

  3. GATSBI-embedding GATSBI-embedding Public

    Python 13

  4. HOTPocket HOTPocket Public

    Code and data accompanying "The Human Omnibus of Targetable Pockets" by Kristy A. Carpenter and Russ B. Altman

    Python 11 4

  5. ESM_highAttention ESM_highAttention Public

    Python 7

  6. PathwayQA PathwayQA Public

    Benchmark QA dataset generation from Reactome and Evaluation with 9 LLMs

    Python 2

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