Name	Name	Last commit message	Last commit date
Latest commit History 249 Commits
Rscripts	Rscripts
SOYGO	SOYGO
configFiles	configFiles
get_GitHub_file	get_GitHub_file
00_build_index_hisat2.sh	00_build_index_hisat2.sh
01_lastz_prepare_kmers.sh	01_lastz_prepare_kmers.sh
CopyNumberGen.sh	CopyNumberGen.sh
ExtractSCOs.sh	ExtractSCOs.sh
ExtractSeq.sh	ExtractSeq.sh
Fastq2CA.sh	Fastq2CA.sh
GI2Taxonomy.sh	GI2Taxonomy.sh
GOseq_auto.sh	GOseq_auto.sh
GuessEncoding.sh	GuessEncoding.sh
JRC.sh	JRC.sh
JobBLAST.sh	JobBLAST.sh
JobP128.sh	JobP128.sh
JobQ.sh	JobQ.sh
JobR.sh	JobR.sh
JobR_BLAST.sh	JobR_BLAST.sh
JobR_condo.sh	JobR_condo.sh
JobTime.sh	JobTime.sh
JobTime2.sh	JobTime2.sh
Khmer_interleave.sh	Khmer_interleave.sh
L3.ModuleGen.sh	L3.ModuleGen.sh
LAS-makeSLURMp.py	LAS-makeSLURMp.py
Lines_based_file_deletion.sh	Lines_based_file_deletion.sh
ModuleGen.sh	ModuleGen.sh
N50Calc.pl	N50Calc.pl
PcB_filter_stats.sh	PcB_filter_stats.sh
Quiver_01.sh	Quiver_01.sh
Quiver_02.sh	Quiver_02.sh
README.md	README.md
Rscript_for_plotting_bayescan_results.sh	Rscript_for_plotting_bayescan_results.sh
SAM_to_sortedBAM.sh	SAM_to_sortedBAM.sh
SRAfq2FASTQ.sh	SRAfq2FASTQ.sh
a_loghistory_func.sh	a_loghistory_func.sh
a_longhistory_func.sh	a_longhistory_func.sh
abacas.1.3.1.pl	abacas.1.3.1.pl
acd_func.sh	acd_func.sh
addFastaHeaders.pl	addFastaHeaders.pl
backup	backup
bayes_script.sh	bayes_script.sh
biostar	biostar
biostar.cpp	biostar.cpp
blastXML2Tab.py	blastXML2Tab.py
blast_job_gen.sh	blast_job_gen.sh
blast_wrapper.sh	blast_wrapper.sh
bowtie2_se_noclip.sh	bowtie2_se_noclip.sh
bwa_map_sort.sh	bwa_map_sort.sh
cb	cb
cdgit	cdgit
cegma.sh	cegma.sh
checkBlastStatus.sh	checkBlastStatus.sh
clean_trinity.sh	clean_trinity.sh
combineRawFiles.sh	combineRawFiles.sh
connected_graphs.awk	connected_graphs.awk
count.sh	count.sh
count_fastq.sh	count_fastq.sh
create_sam.sh	create_sam.sh
decison_tree_for_picking_common_strata_for_orthogroups.sh	decison_tree_for_picking_common_strata_for_orthogroups.sh
dos2unix	dos2unix
downloadSRA_ebi.sh	downloadSRA_ebi.sh
edit_sam_files.sh	edit_sam_files.sh
end_time.sh	end_time.sh
extract_seq.sh	extract_seq.sh
extract_seq.sh.save	extract_seq.sh.save
fasta-splitter.pl	fasta-splitter.pl
fasta2fastq.py	fasta2fastq.py
fastaMulti2singleLine.pl	fastaMulti2singleLine.pl
fastaSortByName.pl	fastaSortByName.pl
fasta_distribution.pl	fasta_distribution.pl
fasta_length.py	fasta_length.py
fastarange	fastarange
fastarange.c	fastarange.c
fastasplitn	fastasplitn
fastasplitn.c	fastasplitn.c
fastq-splitter.pl	fastq-splitter.pl
fastq2fasta.sh	fastq2fasta.sh
fastqc_parse.py	fastqc_parse.py
fastqc_stats.sh	fastqc_stats.sh
fasttrans	fasttrans
fasttrans.c	fasttrans.c
filecount	filecount
filter_parllel_log.sh	filter_parllel_log.sh
firstInstanceOf.awk	firstInstanceOf.awk
fna_qual2fastq.py	fna_qual2fastq.py
formatOut2Tab.sh	formatOut2Tab.sh
fq2bam.sh	fq2bam.sh
genome-gaps-as-bed.py	genome-gaps-as-bed.py
get_ip	get_ip
get_taxanomy.sh	get_taxanomy.sh
gff2fasta.pl	gff2fasta.pl
gitgrep	gitgrep
gmap_cdna.sh	gmap_cdna.sh
gsize.sh	gsize.sh
gsnap_pe.sh	gsnap_pe.sh
gsnap_pe2.sh	gsnap_pe2.sh
gsnap_pe_clip.sh	gsnap_pe_clip.sh
gsnap_pe_clip_final.sh	gsnap_pe_clip_final.sh
gsnap_pe_noclip.sh	gsnap_pe_noclip.sh

Name

Last commit message

Last commit date

249 Commits

00_build_index_hisat2.sh

01_lastz_prepare_kmers.sh

CopyNumberGen.sh

ExtractSCOs.sh