GitHub - JFresnedo/scripts

Name	Name	Last commit message	Last commit date
Latest commit History 132 Commits
HaploManager	HaploManager
Oceanic	Oceanic
README.md	README.md
agp_from_fasta.py	agp_from_fasta.py
align_haplotypes.pl	align_haplotypes.pl
aligner_test.pl	aligner_test.pl
assess_markers.pl	assess_markers.pl
assign_snps_to_markers.pl	assign_snps_to_markers.pl
build_linkage_maps.pl	build_linkage_maps.pl
calculate_edge_mask_block_distribution.pl	calculate_edge_mask_block_distribution.pl
check_for_run_bias.pl	check_for_run_bias.pl
clean_Lep-MAP_output.pl	clean_Lep-MAP_output.pl
convert_blocks_to_agp.pl	convert_blocks_to_agp.pl
convert_mutation_rate_bams_to_fastq.pl	convert_mutation_rate_bams_to_fastq.pl
convert_vcf_to_joinmap.pl	convert_vcf_to_joinmap.pl
ddrad_fragment_simulator.pl	ddrad_fragment_simulator.pl
dstat_simulation.pl	dstat_simulation.pl
find_unique_blocks.pl	find_unique_blocks.pl
generate_dennis_alignments.pl	generate_dennis_alignments.pl
generate_rms_distributions.pl	generate_rms_distributions.pl
genome_kb_plot.pl	genome_kb_plot.pl
gff_to_embl.py	gff_to_embl.py
make_overlap_db.py	make_overlap_db.py
map_genome.pl	map_genome.pl
marker_type_checker.pl	marker_type_checker.pl
output_raw_patterns.pl	output_raw_patterns.pl
parse_rad_bd_data.pl	parse_rad_bd_data.pl
partition_reference_into_intervals.pl	partition_reference_into_intervals.pl
plot_bd.R	plot_bd.R
plot_genome_map.R	plot_genome_map.R
plot_genome_scaffolds.R	plot_genome_scaffolds.R
reassemble_genome.pl	reassemble_genome.pl
reassemble_genome.py	reassemble_genome.py
scaffoldgenome.jl	scaffoldgenome.jl
scaffoldgenome.pl	scaffoldgenome.pl
sex_by_coverage.py	sex_by_coverage.py
validate_map.pl	validate_map.pl
vcf-mapping-cross-stats.pl	vcf-mapping-cross-stats.pl
vcf-parallel.pl	vcf-parallel.pl
vcf.jl	vcf.jl
vcf_bin_patterns.pl	vcf_bin_patterns.pl
vcf_gq_dp_missing_data.pl	vcf_gq_dp_missing_data.pl
vcf_gq_summary.pl	vcf_gq_summary.pl
vcf_info_field.pl	vcf_info_field.pl
vcf_maternal.pl	vcf_maternal.pl

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assign_snps_to_markers.pl