To run the program
py ./pipeline.pyTo demultiplex is to convert a data source that is combined, and to split up the relations into unrelated unique data sets.
For this project I wanted to learn how to munge data, learn about BioPy, and to further my knowledge of Genomics/BioInformatics. Alot of the process was made up of learning Graduate level material in consideration to the Genomics / Biological Algorithms.
In order for the layman to understand the concepts, I've included a quick review as to the underlying processes.
The sequence file has barcodes(an amino acid chain) that read for the symptoms associated with the clinical data of the patients. By comparing and contrasting the motifs for each patient we are able to distinguish between wild types (type of mutation) and the reference disease dgorgon. We output the munged data and store the results in a user readable text file named report.