Skip to content

biomedical subset Uniprot query (Disbiome, PD Metagenomics)#10

Open
bsantan wants to merge 3 commits intomainfrom
human_disease_microbes
Open

biomedical subset Uniprot query (Disbiome, PD Metagenomics)#10
bsantan wants to merge 3 commits intomainfrom
human_disease_microbes

Conversation

@bsantan
Copy link
Copy Markdown
Collaborator

@bsantan bsantan commented Jun 6, 2024

Creates all microbial tsv files in data/raw/s3 for Disbiome and PD Metagenomics bugs. Includes the following sources of NCBITaxon lists:

  • data/raw/Disbiome_Microbe_Labels.csv
  • data/raw/Pd_Microbe_Labels.csv

Includes the following source controlled intermediate files:

  • data/raw/Proteomes_KGMicrobe_Subset.tsv
  • data/raw/Proteomes.tsv
  • data/raw/uniprot_empty_organism.tsv

@bsantan bsantan changed the title disbiome and pd metagenomics bugs file creation biomedical subset Uniprot query (Disbiome, PD Metagenomics) Jun 10, 2024
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

1 participant