chore(ci): adopt reusable workflow templates

[KooshaPari]

User description

Use shared reusable trufflehog/cargo-deny workflows from phenotype-tooling.

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Note

Low Risk
CI-only refactor with no application code changes; behavior now depends on external reusable workflows pinned to @main.

Overview
cargo-deny and Trufflehog workflows no longer run their steps inline. Each job now delegates to shared reusable workflows in KooshaPari/phenotype-tooling on main, matching the pattern already used for SBOM refresh.

For cargo-deny, the local checkout, Rust toolchain, and EmbarkStudios/cargo-deny-action steps (including ./codex-rs defaults) are removed, and the workflow_dispatch trigger is dropped so only PR and push-to-main runs remain.

For Trufflehog, the checkout, setup, and trufflehog github --only-verified run are replaced by the reusable workflow; trigger coverage stays PR plus push to main.

^{Reviewed by Cursor Bugbot for commit a0e2291. Bugbot is set up for automated code reviews on this repo. Configure here.}

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CodeAnt-AI Description

Move secret and dependency scans to shared CI workflows

What Changed

• Trufflehog and cargo-deny now run through shared reusable workflows instead of being defined inline in this repo
• cargo-deny no longer has a manual trigger; it runs on pull requests and pushes to main
• Trufflehog still runs on pull requests and pushes to main

Impact

✅ Consistent security checks across repositories
✅ Fewer CI maintenance updates
✅ Less chance of missed secret and dependency scan runs

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[cursor]

Cursor Bugbot has reviewed your changes and found 1 potential issue.

Bugbot Autofix prepared a fix for the issue found in the latest run.

• ✅ Fixed: Missing codex-rs cargo-deny target
  • Restored cargo-deny to run against codex-rs/Cargo.toml via manifest-path so the production Rust workspace and deny.toml are enforced instead of the minimal root package.

Or push these changes by commenting:

@cursor push df0972a0c9

Preview (df0972a0c9)

diff --git a/.github/workflows/cargo-deny.yml b/.github/workflows/cargo-deny.yml
--- a/.github/workflows/cargo-deny.yml
+++ b/.github/workflows/cargo-deny.yml
@@ -6,4 +6,18 @@
       - main
 jobs:
   cargo-deny:
-    uses: KooshaPari/phenotype-tooling/.github/workflows/reusable/cargo-deny.yml@main
+    runs-on: ubuntu-24.04
+    steps:
+      - name: Checkout
+        uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4.2.2
+
+      - name: Install Rust toolchain
+        uses: dtolnay/rust-toolchain@3c5f7ea28cd621ae0bf5283f0e981fb97b8a7af9
+        with:
+          toolchain: stable
+
+      - name: Run cargo-deny
+        uses: EmbarkStudios/cargo-deny-action@91bf2b620e09e18d6eb78b92e7861937469acedb # v6
+        with:
+          rust-version: stable
+          manifest-path: codex-rs/Cargo.toml

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^{Reviewed by Cursor Bugbot for commit a0e2291. Configure here.}