Remove duplicate EK80 multiplex fixture - #1
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add data for echostack-org#1703
…assets add data & update conftest.py for heading test
…heading-zip Update conftest.py
Fix docstring sections that weren't getting into the rendered docs
Make the bibliography appear in the generated docs
docs: fix broken contributing page reference
updates: - [github.com/astral-sh/ruff-pre-commit: v0.15.21 → v0.15.22](astral-sh/ruff-pre-commit@v0.15.21...v0.15.22) - [github.com/codespell-project/codespell: v2.4.2 → v2.4.3](codespell-project/codespell@v2.4.2...v2.4.3)
…i-update-config [pre-commit.ci] pre-commit autoupdate
Bumps [actions/setup-python](https://github.com/actions/setup-python) from 6.3.0 to 7.0.0. - [Release notes](https://github.com/actions/setup-python/releases) - [Commits](actions/setup-python@v6.3.0...v7.0.0) --- updated-dependencies: - dependency-name: actions/setup-python dependency-version: 7.0.0 dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] <support@github.com>
Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.14.0 to 1.14.1. - [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) - [Commits](pypa/gh-action-pypi-publish@v1.14.0...v1.14.1) --- updated-dependencies: - dependency-name: pypa/gh-action-pypi-publish dependency-version: 1.14.1 dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] <support@github.com>
…ithub_actions/pypa/gh-action-pypi-publish-1.14.1 chore(deps): bump pypa/gh-action-pypi-publish from 1.14.0 to 1.14.1
…ithub_actions/actions/setup-python-7.0.0 chore(deps): bump actions/setup-python from 6.3.0 to 7.0.0
* Update pyproject.toml - Change how license details are given (previous way was deprecated) - Use version_file instead of write_to for setuptools_scm (write_to is deprecated) - Move the test, docs, and dev optional dependencies to be dependency groups instead (assuming that those dependencies are not intended for users to install) - Added matplotlib to the test dependency group (it's used in some of the tests) * Use --group syntax to install test and plot groups (instead of when they were extras) * remove plot group from install cmd (not needed as matplotlib is in the test group) * Use uv instead of pip for creating the docs as the pip version doesn't let one specify dependency groups to include * uv prep: prevent pre-commit from spell checking uv.lock files * Fix failure of uv build from a fresh checkout * Add docs for uv * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Better present the conda/uv and linux/windows options for dev setup [skip-CI] * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * Apply a 7 day cooldown period to using new versions of dependencies * Update development setup * Set default set of dependency groups to reduce typing when using uv commands * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * small tweak to add PR workflow back --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Lloyd Izard <76954858+LOCEANlloydizard@users.noreply.github.com> Co-authored-by: Wu-Jung Lee <leewujung@gmail.com>
* Update pyproject.toml - Change how license details are given (previous way was deprecated) - Use version_file instead of write_to for setuptools_scm (write_to is deprecated) - Move the test, docs, and dev optional dependencies to be dependency groups instead (assuming that those dependencies are not intended for users to install) - Added matplotlib to the test dependency group (it's used in some of the tests) * Use --group syntax to install test and plot groups (instead of when they were extras) * remove plot group from install cmd (not needed as matplotlib is in the test group) * Use uv instead of pip for creating the docs as the pip version doesn't let one specify dependency groups to include * uv prep: prevent pre-commit from spell checking uv.lock files * update files to upgrade from [3.11-3.13] to [3.12-3.14] --------- Co-authored-by: Gavin Macaulay <gavin@macaulay.co.nz>
…Error (echostack-org#1627) * fix: deduplicate time values in add_location instead of raising ValueError * ci: retry * Update echopype/consolidate/api.py Co-authored-by: Wu-Jung Lee <leewujung@gmail.com> * Update echopype/consolidate/api.py Co-authored-by: Wu-Jung Lee <leewujung@gmail.com> * Update echopype/consolidate/loc_utils.py Co-authored-by: Wu-Jung Lee <leewujung@gmail.com> * Update echopype/consolidate/api.py Co-authored-by: Wu-Jung Lee <leewujung@gmail.com> * fix: pre-commit whitespace and docstring formatting in add_location --------- Co-authored-by: Wu-Jung Lee <leewujung@gmail.com>
* Fix channel-frequency mapping in compute_MVBS * remove the test and code for ping_time in freq_nominal
LOCEANlloydizard
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Regrid functionality
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Removes the duplicate
ek80_multiplex_pathfixture and the redundantEK80_MULTItest-data alias.Closes echostack-org#1675