Accurate cell type deconvolution in spatial transcriptomics using a batch effect-free strategy

Code to reproduce figures in the ReSort manuscript. Please see subfolders for detail information.

• requirements.yaml: yaml file to create a conda environment required to run the code.
• simulation: code, data, and results for the simulated benchmarking experiments (fig. 1-3 in the paper).
• MBC_EMT: Mouse Breast Cancer Epithelial to Mesenchymal Transition Study (application, fig. 4-5 in the paper).