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collapse_isoforms_by_sam.py out of memory

Status: Open.

#250 In Magdoll/cDNA_Cupcake;

· yuke-w opened on Apr 29, 2024

cdna_cupcake与SQANTI3

Status: Open.

#249 In Magdoll/cDNA_Cupcake;

· tky199996 opened on Mar 20, 2024

Demultiplex after clustering / genome alignment

Status: Open.

#248 In Magdoll/cDNA_Cupcake;

· davidvilanova opened on Mar 7, 2024

fusion_finder.py

Status: Open.

#247 In Magdoll/cDNA_Cupcake;

· tky199996 opened on Mar 3, 2024

Saturation analysis bug fixes; compatibility with newer isoseq cluster [make_file_for_subsampling_from_collapsed.py]

Status: Open.

#244 In Magdoll/cDNA_Cupcake;

· mrendleman opened on Oct 12, 2023

solved

Status: Open.

#242 In Magdoll/cDNA_Cupcake;

· gengbaobao opened on Sep 22, 2023

Cython compiler error when installing/building cDNA_cupcake

Status: Open.

#241 In Magdoll/cDNA_Cupcake;

· skchronicles opened on Sep 14, 2023

TypeError: iter_gmap_sam() got an unexpected keyword argument 'type' using collapse_isoforms_by_sam.py

Status: Open.

#236 In Magdoll/cDNA_Cupcake;

· gyorkeia opened on Jan 17, 2023

fusion_collate_info.py script has bugs and its not working.

Status: Open.

#235 In Magdoll/cDNA_Cupcake;

· unique379r opened on Nov 15, 2022

lima for skera.bam

Status: Open.

#234 In Magdoll/cDNA_Cupcake;

· hmyh1202 opened on Nov 8, 2022

Create sam format for collapse_isoforms_by_sam.py

Status: Open.

#232 In Magdoll/cDNA_Cupcake;

· rodrisenovilla opened on Oct 3, 2022

cupcake2 directory missing, compilation fails

Status: Open.

#231 In Magdoll/cDNA_Cupcake;

· dvargaslandin opened on Sep 1, 2022