Release 0.5.0

.github/workflows/CIlts.yml

@@ -24,12 +24,12 @@ jobs:
     name: Julia "lts" - ubuntu-latest - x64 - ${{ github.event_name }}
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: julia-actions/setup-julia@v2
         with:
           version: "lts"
           arch: x64
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
         with:

.github/workflows/CIpre.yml

@@ -24,12 +24,12 @@ jobs:
     name: Julia "pre" - ubuntu-latest - x64 - ${{ github.event_name }}
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: julia-actions/setup-julia@v2
         with:
           version: "pre"
           arch: x64
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
         with:

.github/workflows/CIv1withcov.yml

@@ -24,17 +24,17 @@ jobs:
     name: Julia "1" - ubuntu-latest - x64 - ${{ github.event_name }}
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@v6
       - uses: julia-actions/setup-julia@v2
         with:
           version: "1"
           arch: x64
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - uses: julia-actions/julia-buildpkg@v1
       - uses: julia-actions/julia-runtest@v1
         with:
           prefix: xvfb-run -s '-screen 0 1024x768x24'
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v5
+      - uses: codecov/codecov-action@v6
         with:
           token: ${{ secrets.CODECOV_TOKEN }}

.github/workflows/Documentation.yml

@@ -21,7 +21,7 @@ jobs:
       - uses: julia-actions/setup-julia@v2
         with:
           version: "1"
-      - uses: julia-actions/cache@v2
+      - uses: julia-actions/cache@v3
       - name: Install dependencies
         run: xvfb-run -s '-screen 0 1024x768x24' julia --color=yes --project=docs -e 'using Pkg; Pkg.develop(PackageSpec(path=pwd())); Pkg.instantiate()'
       - name: Build and deploy

.gitignore

@@ -22,9 +22,10 @@ docs/site/
 docs/node_modules/
 docs/package-lock.json
 
-# Notebooks auto-generated by Literate. We only build the docs locally, so we don't need to
-# commit these.
+# Files auto-generated by Literate.
 examples/notebooks/*.ipynb
+docs/src/Examples/*.md
+!docs/src/Examples/Introduction.md
 
 # File generated by Pkg, the package manager, based on a corresponding Project.toml
 # It records a fixed state of all packages used by the project. As such, it should not be

Project.toml

@@ -1,6 +1,6 @@
 name = "Mantis"
 uuid = "45fd81cf-4570-4cb4-b51d-06adeaefc15d"
-version = "0.4.0"
+version = "0.5.0"
 authors = ["Diogo Costa Cabanas <d.costacabanas@tudelft.nl>", "Joey Dekker <j.dekker-2@tudelft.nl>", "Deepesh Toshniwal <d.toshniwal@tudelft.nl>", "Artur Palha <a.palha@tudelft.nl>"]
 
 [deps]
@@ -19,19 +19,19 @@ ToeplitzMatrices = "c751599d-da0a-543b-9d20-d0a503d91d24"
 WriteVTK = "64499a7a-5c06-52f2-abe2-ccb03c286192"
 
 [weakdeps]
-GLMakie = "e9467ef8-e4e7-5192-8a1a-b1aee30e663a"
+Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a"
 
 [extensions]
-GLMakieExt = "GLMakie"
+MakieExt = "Makie"
 
 [compat]
 Combinatorics = "1.1.0"
 FFTW = "1.10.0"
 FastGaussQuadrature = "1.0.0"
-GLMakie = "0.13"
 Graphs = "1.14.0"
 LaTeXStrings = "1.4.0"
 LinearAlgebra = "1.10"
+Makie = "0.24"
 Memoization = "0.2"
 MeshCore = "1.3.5"
 PolynomialBases = "0.4"

docs/Project.toml

@@ -12,4 +12,10 @@ Mantis = "45fd81cf-4570-4cb4-b51d-06adeaefc15d"
 Mantis = {path = ".."}
 
 [compat]
+DisplayAs = "0.1.6"
 Documenter = "1.3"
+DocumenterCitations = "1.4.1"
+DocumenterVitepress = "0.3.2"
+GLMakie = "0.13.9"
+Literate = "2.21.0"
+LiveServer = "1.5.0"

docs/make.jl

@@ -17,7 +17,7 @@ for example in readdir(examples_dir)
 
         push!(example_names, example[1:(end-3)])  # Remove the file extension from the name.
 
-        Literate.notebook(path_to_example, joinpath(mantis_dir, "examples", "notebooks"))
+        # Literate.notebook(path_to_example, joinpath(mantis_dir, "examples", "notebooks"))
 
         Literate.markdown(
             path_to_example,
@@ -27,8 +27,6 @@ for example in readdir(examples_dir)
     end
 end
 
-Manual = [joinpath("Manual", "InstallGuide.md")]
-
 Examples = [
     joinpath("Examples", "Introduction.md"),
     map(example_name -> joinpath("Examples", "$example_name.md"), example_names)...,
@@ -72,6 +70,10 @@ Support = [
 ]
 
 ReleaseHistory = [
+    "v0.5 Acanthops godmani" => joinpath(
+		"ReleaseHistory", "v0-Acanthops", "v0.5-godmani.md"),
+    "v0.4 Acanthops falcata" => joinpath(
+		"ReleaseHistory", "v0-Acanthops", "v0.4-falcata.md"),
     "v0.3 Acanthops erosa" => joinpath(
 		"ReleaseHistory", "v0-Acanthops", "v0.3-erosa.md"),
     "v0.2 Acanthops centralis" => joinpath(
@@ -82,7 +84,7 @@ ReleaseHistory = [
 
 Pages = [
     "Home" => "index.md",
-    "Manual" => Manual,
+	"Getting Started" => "GettingStarted.md",
     "Examples" => Examples,
     "Tutorials" => Tutorials,
     "Developer Documentation" => DevelDocs,