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Update samplesheet_processing samplesheet to have demultiplexer name #15

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Update samplesheet_processing samplesheet to have demultiplexer name #15

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10 changes: 10 additions & 0 deletions .github/PULL_REQUEST_TEMPLATE.md
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Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
**What problems does this PR solve?**
Provide a short description or reference to the relevant issue, explaining what problems this PR solves.

**How has the changes been tested?**
In addition to automatic tests, has any manual testing been carried out?

**Reasons for careful code review**
If any of the boxes below are checked, extra careful code review should be inititated.

- [ ] This PR contains code that could remove data
2 changes: 1 addition & 1 deletion files/Dockerfile.snpseq-tester
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Expand Up @@ -46,7 +46,7 @@ RUN touch /var/log/nginx/access.log
RUN echo '*' > /etc/arteria/misc/summary.rsync
RUN echo '*' > /etc/arteria/misc/hiseq.rsync
RUN echo '*' > /etc/arteria/misc/olink_explore.rsync
RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 2 -name "*SampleSheet.csv" |while read f; do n=$(echo $(basename $(dirname $f)) |rev |cut -f1 -d_ |rev); n=${n:1}; cp $f /mnt/samplesheet_processning/${n}_samplesheet.csv; done'
RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 2 -name "*SampleSheet.csv" |while read f; do n=$(echo $(basename $(dirname $f)) |rev |cut -f1 -d_ |rev); n=${n:1}; cp $f /mnt/samplesheet_processning/bcl2fastq_${n}_samplesheet.csv; done'
RUN bash -c 'find /data/snpseq-tester/runfolders -maxdepth 1 -type d -name "*A00001*" |while read d; do n=$(basename $d); touch /data/scratch/$n; touch /data/snpseq-tester/runfolders/${n}_archive; done'
RUN cp /mnt/samplesheet_processning/*.csv /data/
RUN ln -s /usr/bin/echo /usr/local/bin/projman_filler
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