Merge Develop 2.3 -> Develop - #409

Merged

bcarlsenca merged 137 commits into

Aug 22, 2025

Commits on Jun 6, 2025

Update gradle version to match evs-explore
bcarlsenca
committed
f19a991

Commits on Jun 9, 2025

update flags/indexes separately
Peter Van Ausdeln
committed
4cd0fff
static stuff
peter-va
committed
991b228
fix scoping
peter-va
committed
e19ae92
standardize some whitespace
peter-va
committed
1e493fb
add version to logging
peter-va
committed
7f8e7a3
add a fake terminology to index reconciliation
peter-va
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ca074e6
move reconciliation to early on in main
peter-va
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37503d4
make the reconcile catch more explicit
peter-va
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376626c
add trivy-scan to transition develop branches
peter-va
committed
78ad554

Commits on Jun 10, 2025

Commits on Jun 11, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
ab562c8

Commits on Jun 12, 2025

merging non-ncit hotfix into develop-2.3 (#373)

peter-va
and
peter-va
authored
365283f

Commits on Jun 14, 2025

Small fix to script to let run properly on mac
bcarlsenca
committed
f7464a6

Commits on Jun 16, 2025

Commits on Jun 17, 2025

fix bugs with mapset removal
peter-va
committed
98bff4d

Commits on Jun 18, 2025

CVE-2025-48988 fix
peter-va
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261261b
add test for removed mapset
peter-va
committed
3420a2a

Commits on Jun 20, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
1c650d6

Commits on Jun 21, 2025

Merge pull request #377 from NCIEVS/PVA/EVSRESTAPI-613-verify-mapset-removal
peter-va
authored
89eefeb

Commits on Jun 23, 2025

Dss/evsrestapi 619 instance url param (#378)
shapirod2
authored
8ec5f61

Commits on Jun 24, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
17c6c73

Commits on Jun 25, 2025

change filename for medrt devreset
peter-va
committed
f081a8f
fix test for new version
peter-va
committed
52fac32

Commits on Jun 27, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
d5a9ef5
Spotless formatting
bcarlsenca
committed
6ac9b11

Commits on Jun 30, 2025

sampling and test fixes
peter-va
committed
1a900ad
change devreset link
peter-va
committed
f52f3f0
Dss/evsrestapi 622 conceptmap translate (#381)
shapirod2
authored
a187536
Merge pull request #382 from NCIEVS/EVSRESTAPI-627-update-unittestdata-medrt
peter-va
authored
ab78700
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
authored
35823b8

Commits on Jul 2, 2025

Dss/evsrestapi 621 valueset performance (#385)
shapirod2
authored
3036a1c

Commits on Jul 3, 2025

Merge pull request #383 from NCIEVS/PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
authored
e021fc6
EVSRESTAPI-620: update parameter setting on valueset expands endpoints (#376)

shapirod2
and
bcarlsenca
authored
66cd98a
Dss/evsrestapi 623 fhir clientsdk tests (#384)
shapirod2
authored
3261ed5
Dss/evsrestapi 558 fhir dates (#386)
shapirod2
authored
a9ca0d7
change to new filename
peter-va
committed
0770b07
update file refs in devreset and load.sh
peter-va
committed
93070c7

Commits on Jul 4, 2025

Merge branch 'develop-2.3' into PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
committed
8ad6ec3

Commits on Jul 7, 2025

fix a couple issues with -d
peter-va
committed
0b757f7
CLEANUP: warnings and formatting
bcarlsenca
committed
7714713

Commits on Jul 8, 2025

fix canmed devreset
peter-va
committed
51ce6b3
fix load canmed
peter-va
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5997eab
edit hgnc sample test
peter-va
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7489f02
add default cumulative history
peter-va
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7e78a04
Merge branch 'PVA/EVSRESTAPI-631-update-unittestdata-hgnc' into PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
committed
687c539
change filename
peter-va
committed
a7ff33c
edit sample test
peter-va
committed
5f06db0

Commits on Jul 9, 2025

edit sampling for go
peter-va
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895a547
edit filename for chebi
peter-va
committed
5e11617
fix chebi sample tests
peter-va
committed
f1ca587
Merge pull request #387 from NCIEVS/PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
authored
d143ad0
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-630-update-unittestdata-go
Peter Van Ausdeln
committed
07b9b4c
Merge pull request #388 from NCIEVS/PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
authored
adef7e2
Merge pull request #389 from NCIEVS/PVA/EVSRESTAPI-629-update-unittestdata-chebi
peter-va
authored
0b3f417
CLEANUP: imports and small efficiency thing
bcarlsenca
committed
f45de80
Merge branch 'develop-2.3' of github.com:NCIEVS/evsrestapi into develop-2.3
bcarlsenca
committed
1e96452

Commits on Jul 11, 2025

Dss/evsrestapi 626 conceptmap date (#391)
shapirod2
authored
af3fff3

Commits on Jul 13, 2025

move to searchable
peter-va
committed
73b8b55
remove reliance on localhost running in local reindex
peter-va
committed
4e791c2
reconcile graphdb/elasticsearch in reindex
peter-va
committed
ea99307

Commits on Jul 14, 2025

tweaks
peter-va
committed
0ab89cc
Dss/evsrestapi 626 conceptmap date (#394)
shapirod2
authored
f8e5218
Merge pull request #392 from NCIEVS/PVA/EVSRESTAPI-639-move-ncit-maps-into-viewable
peter-va
authored
ff22ba7
Merge pull request #393 from NCIEVS/PVA/EVSRESTAPI-573-reconcile-graphdb-in-reindex
peter-va
authored
da18fd6
change locations for consistency
peter-va
committed
fdd50c8
new samples
peter-va
committed
01d3dda
change message in reindex
peter-va
committed
e20790a
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
24d0801
fix merge issue with develop-2.3
peter-va
committed
2e8581b
change filenames
peter-va
committed
d13710d

Commits on Jul 15, 2025

partial test change
peter-va
committed
3a7b434
remove logging
peter-va
committed
4411700
fix some tests based on terminology version
peter-va
committed
ba48395
spotless stuff
Peter Van Ausdeln
committed
bda57fd
fix a test
peter-va
committed
189cfe9
Merge branch 'PVA/EVSRESTAPI-632-update-unittestdata-ncit' of https://github.com/NCIEVS/evsrestapi into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
9a6dd36
fix a few more tests
peter-va
committed
046e96c
fix more tests
peter-va
committed
4474f47

Commits on Jul 16, 2025

add history file
peter-va
committed
2959a83

Commits on Jul 17, 2025

Merge branch 'PVA/EVSRESTAPI-642-fix-normname-processing-in-history-childhoodneoplasm' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
b7459fe
edits to ncit samples
peter-va
committed
00b5adc
exclude synonyms from update
peter-va
committed
2d42fe5
fix tests
peter-va
committed
75c87d2

Commits on Jul 18, 2025

add more fix to WriteOnlyProperty issues
peter-va
committed
de49c34
tune the fields that we're using WriteOnlyProperties for
peter-va
committed
ce6228e

Commits on Jul 21, 2025

Merge branch 'develop' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
c96c4ef
Merge pull request #395 from NCIEVS/PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
authored
edfc38d
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-575-improve-term-form-tests
peter-va
committed
2c7c55a

Commits on Jul 22, 2025

change tests to work with configs set
peter-va
committed
f519ac7
escape hatch env var
Peter Van Ausdeln
committed
24846be
add one more test to the config checking
Peter Van Ausdeln
committed
5e30b9f
add more tests
Peter Van Ausdeln
committed
9f95aa3
some of these tests aren't actually integration tests
peter-va
committed
3a2b8aa
tests don't do anything because of the mock bean, removing
peter-va
committed
952ffcb
revert last bit of those tests
peter-va
committed
a8e2594

Commits on Jul 23, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
f48a286
fix filepaths
peter-va
committed
eec4eb3
syntax error
peter-va
committed
b28f5ec
remove writeonlyproperty + add test
peter-va
committed
04aee63
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
committed
c6d9d99
edit how the config checker works based on env variables
peter-va
committed
f231e31
tweaks from feedback
peter-va
committed
2c4bfd4

Commits on Jul 25, 2025

Dss/evsrestapi 620 valueset expand tests (#397)
shapirod2
authored
84d8d13
EVSRESTAPI: update canmed testing version (#396)
shapirod2
authored
30e177d

Commits on Jul 28, 2025

Merge pull request #401 from NCIEVS/PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
authored
212be0c
add sourceTerminologyVersion for all mappings
peter-va
committed
fa28b15

Commits on Jul 29, 2025

add filepaths for welcomeText
Peter Van Ausdeln
committed
38008e6

Commits on Jul 30, 2025

Commits on Jul 31, 2025

bail on integration tests when configs not set
peter-va
committed
9205608
remove GDC-specific sentence
peter-va
committed
07c11ec
some changes to loading metadata for non-indexed mappings
peter-va
committed
f57e50b
Small fixes for UnitTestData alignment
bcarlsenca
committed
f1937e2

Commits on Aug 1, 2025

EVSREsTAPI-651: ensure mapset loader handles first line properly (#404)
bcarlsenca
authored
cbb3ae5
add test for ncit_maps_to properties
peter-va
committed
ae3f2f9

Commits on Aug 2, 2025

Merge pull request #405 from NCIEVS/PVA/EVSRESTAPI-548-sourceTerminologyVersion
peter-va
authored
c88cfb0

Commits on Aug 4, 2025

Commits on Aug 5, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
684a22f

Commits on Aug 6, 2025

fix some sample tests
peter-va
committed
078a41c

Commits on Aug 7, 2025

some fixes to indexing
peter-va
committed
4f78881

Commits on Aug 8, 2025

single out owl:deprecated to support new chebi
peter-va
committed
5094ab6

Commits on Aug 15, 2025

fix unit test data pathing
peter-va
committed
71b7305
edit qualifier model to show code
peter-va
committed
3254c12
edit indexing to add code to qualifiers
peter-va
committed
9d71c05
clear out more removing-code lines
peter-va
committed
779c9d8

Commits on Aug 18, 2025

add test for viewable qualifier codes
peter-va
committed
2ba967b
spotless
peter-va
committed
2ffdf5e
one more qualifier code check
peter-va
committed
5616790

Commits on Aug 19, 2025

remove unused clearHidden functions
peter-va
committed
780028b
add qualifier sample to ncit.txt
peter-va
committed
b6c7c80
Merge pull request #406 from NCIEVS/PVA/EVSRESTAPI-641-update-for-new-chebi
peter-va
authored
45c71e7

Commits on Aug 22, 2025

EVSRESTAPI-407: handling part of NCIM update (#407)
bcarlsenca
authored
2c6963c