Merge 2.3.0 changes from develop -> main - #463

Merged

bcarlsenca merged 1278 commits into

Mar 3, 2026

This pull request is big! We're only showing the most recent 250 commits

Commits on Jun 9, 2025

static stuff
peter-va
committed
991b228
fix scoping
peter-va
committed
e19ae92
standardize some whitespace
peter-va
committed
1e493fb
add version to logging
peter-va
committed
7f8e7a3
add a fake terminology to index reconciliation
peter-va
committed
ca074e6
move reconciliation to early on in main
peter-va
committed
37503d4
make the reconcile catch more explicit
peter-va
committed
376626c
add trivy-scan to transition develop branches
peter-va
committed
78ad554

Commits on Jun 10, 2025

Commits on Jun 11, 2025

Update OPENSEARCH.md info on refresh interval
bcarlsenca
committed
3d84ac5
Merge branch 'develop' into develop-2.3
bcarlsenca
committed
ab562c8

Commits on Jun 12, 2025

reindex hotfix for non-ncit
peter-va
committed
4ae5988
Merge pull request #372 from NCIEVS/reindex-hotfix
peter-va
authored
0078d74
add filepath match check to null check
peter-va
committed
e4bb367
spotless
peter-va
committed
d4ce244
Merge pull request #374 from NCIEVS/reindex-hotfix-2
peter-va
authored
549b23e
merging non-ncit hotfix into develop-2.3 (#373)

peter-va
and
peter-va
authored
365283f

Commits on Jun 13, 2025

EVSRESTAPI-patch: resolve exception on fhir System Operations tab (#375)
shapirod2
authored
a4a63dd

Commits on Jun 14, 2025

Small fix to script to let run properly on mac
bcarlsenca
committed
f7464a6

Commits on Jun 16, 2025

Commits on Jun 17, 2025

fix bugs with mapset removal
peter-va
committed
98bff4d

Commits on Jun 18, 2025

CVE-2025-48988 fix
peter-va
committed
261261b
add test for removed mapset
peter-va
committed
3420a2a

Commits on Jun 19, 2025

EVSRESTAPI-625: fix issue with swagger baseUrl (#379)
bcarlsenca
authored
dd919a1

Commits on Jun 20, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
1c650d6

Commits on Jun 21, 2025

Commits on Jun 23, 2025

Dss/evsrestapi 619 instance url param (#378)
shapirod2
authored
8ec5f61

Commits on Jun 24, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
17c6c73

Commits on Jun 25, 2025

change filename for medrt devreset
peter-va
committed
f081a8f
fix test for new version
peter-va
committed
52fac32

Commits on Jun 26, 2025

Add comments for cacheMills = 0
bcarlsenca
committed
a615b6b

Commits on Jun 27, 2025

CLEANUP: ensure urls are available with resource providers
bcarlsenca
committed
c1acc47
Merge branch 'develop' into develop-2.3
bcarlsenca
committed
d5a9ef5
Spotless formatting
bcarlsenca
committed
6ac9b11

Commits on Jun 30, 2025

sampling and test fixes
peter-va
committed
1a900ad
change devreset link
peter-va
committed
f52f3f0
Dss/evsrestapi 622 conceptmap translate (#381)
shapirod2
authored
a187536
Merge pull request #382 from NCIEVS/EVSRESTAPI-627-update-unittestdata-medrt
peter-va
authored
ab78700
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
authored
35823b8

Commits on Jul 2, 2025

Dss/evsrestapi 621 valueset performance (#385)
shapirod2
authored
3036a1c

Commits on Jul 3, 2025

Merge pull request #383 from NCIEVS/PVA/EVSRESTAPI-628-update-unittestdata-medrt
peter-va
authored
e021fc6
EVSRESTAPI-620: update parameter setting on valueset expands endpoints (#376)

shapirod2
and
bcarlsenca
authored
66cd98a
Dss/evsrestapi 623 fhir clientsdk tests (#384)
shapirod2
authored
3261ed5
Dss/evsrestapi 558 fhir dates (#386)
shapirod2
authored
a9ca0d7
change to new filename
peter-va
committed
0770b07
update file refs in devreset and load.sh
peter-va
committed
93070c7

Commits on Jul 4, 2025

Merge branch 'develop-2.3' into PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
committed
8ad6ec3

Commits on Jul 7, 2025

fix a couple issues with -d
peter-va
committed
0b757f7
CLEANUP: warnings and formatting
bcarlsenca
committed
7714713

Commits on Jul 8, 2025

fix canmed devreset
peter-va
committed
51ce6b3
fix load canmed
peter-va
committed
5997eab
edit hgnc sample test
peter-va
committed
7489f02
add default cumulative history
peter-va
committed
7e78a04
Merge branch 'PVA/EVSRESTAPI-631-update-unittestdata-hgnc' into PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
committed
687c539
change filename
peter-va
committed
a7ff33c
edit sample test
peter-va
committed
5f06db0

Commits on Jul 9, 2025

edit sampling for go
peter-va
committed
895a547
edit filename for chebi
peter-va
committed
5e11617
fix chebi sample tests
peter-va
committed
f1ca587
Merge pull request #387 from NCIEVS/PVA/EVSRESTAPI-631-update-unittestdata-hgnc
peter-va
authored
d143ad0
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-630-update-unittestdata-go
Peter Van Ausdeln
committed
07b9b4c
Merge pull request #388 from NCIEVS/PVA/EVSRESTAPI-630-update-unittestdata-go
peter-va
authored
adef7e2
Merge pull request #389 from NCIEVS/PVA/EVSRESTAPI-629-update-unittestdata-chebi
peter-va
authored
0b3f417
EVSRESTAPI-636: swagger link fix (#390)
shapirod2
authored
a29d6cb
CLEANUP: imports and small efficiency thing
bcarlsenca
committed
f45de80
Merge branch 'develop-2.3' of github.com:NCIEVS/evsrestapi into develop-2.3
bcarlsenca
committed
1e96452

Commits on Jul 11, 2025

Dss/evsrestapi 626 conceptmap date (#391)
shapirod2
authored
af3fff3

Commits on Jul 13, 2025

move to searchable
peter-va
committed
73b8b55
remove reliance on localhost running in local reindex
peter-va
committed
4e791c2
reconcile graphdb/elasticsearch in reindex
peter-va
committed
ea99307

Commits on Jul 14, 2025

tweaks
peter-va
committed
0ab89cc
Dss/evsrestapi 626 conceptmap date (#394)
shapirod2
authored
f8e5218
Merge pull request #392 from NCIEVS/PVA/EVSRESTAPI-639-move-ncit-maps-into-viewable
peter-va
authored
ff22ba7
Merge pull request #393 from NCIEVS/PVA/EVSRESTAPI-573-reconcile-graphdb-in-reindex
peter-va
authored
da18fd6
change locations for consistency
peter-va
committed
fdd50c8
new samples
peter-va
committed
01d3dda
change message in reindex
peter-va
committed
e20790a
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
24d0801
fix merge issue with develop-2.3
peter-va
committed
2e8581b
change filenames
peter-va
committed
d13710d

Commits on Jul 15, 2025

partial test change
peter-va
committed
3a7b434
remove logging
peter-va
committed
4411700
fix some tests based on terminology version
peter-va
committed
ba48395
spotless stuff
Peter Van Ausdeln
committed
bda57fd
fix a test
peter-va
committed
189cfe9
Merge branch 'PVA/EVSRESTAPI-632-update-unittestdata-ncit' of https://github.com/NCIEVS/evsrestapi into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
9a6dd36
fix a few more tests
peter-va
committed
046e96c
fix more tests
peter-va
committed
4474f47

Commits on Jul 16, 2025

add history file
peter-va
committed
2959a83
add test cases for childhood neoplasm and change index to update
peter-va
committed
dc37cd6
Add childhood neoplasm test
bcarlsenca
committed
0125ad4

Commits on Jul 17, 2025

Merge branch 'PVA/EVSRESTAPI-642-fix-normname-processing-in-history-childhoodneoplasm' into PVA/EVSRESTAPI-632-update-unittestdata-ncit
peter-va
committed
b7459fe
edits to ncit samples
peter-va
committed
00b5adc
exclude synonyms from update
peter-va
committed
2d42fe5
fix tests
peter-va
committed
75c87d2

Commits on Jul 18, 2025

add more fix to WriteOnlyProperty issues
peter-va
committed
de49c34
tune the fields that we're using WriteOnlyProperties for
peter-va
committed
ce6228e
fix WriteOnlyProperties being removed on reindexing concepts
peter-va
committed
c0788d3
tweak test
peter-va
committed
3c3b133

Commits on Jul 21, 2025

Commits on Jul 22, 2025

change tests to work with configs set
peter-va
committed
f519ac7
escape hatch env var
Peter Van Ausdeln
committed
24846be
add one more test to the config checking
Peter Van Ausdeln
committed
5e30b9f
EVSRESTAPI-642: small test fixes
bcarlsenca
committed
49d3fe8
add more tests
Peter Van Ausdeln
committed
9f95aa3
some of these tests aren't actually integration tests
peter-va
committed
3a2b8aa
tests don't do anything because of the mock bean, removing
peter-va
committed
952ffcb
revert last bit of those tests
peter-va
committed
a8e2594

Commits on Jul 23, 2025

Merge branch 'develop' into develop-2.3
bcarlsenca
committed
f48a286
fix filepaths
peter-va
committed
eec4eb3
syntax error
peter-va
committed
b28f5ec
remove writeonlyproperty + add test
peter-va
committed
04aee63
Merge branch 'develop-2.3' into PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
committed
c6d9d99
edit how the config checker works based on env variables
peter-va
committed
f231e31
tweaks from feedback
peter-va
committed
2c4bfd4

Commits on Jul 25, 2025

Dss/evsrestapi 620 valueset expand tests (#397)
shapirod2
authored
84d8d13
EVSRESTAPI: update canmed testing version (#396)
shapirod2
authored
30e177d

Commits on Jul 28, 2025

Merge pull request #401 from NCIEVS/PVA/EVSRESTAPI-643-review-writeonlyproperty
peter-va
authored
212be0c
add sourceTerminologyVersion for all mappings
peter-va
committed
fa28b15

Commits on Jul 29, 2025

add filepaths for welcomeText
Peter Van Ausdeln
committed
38008e6

Commits on Jul 30, 2025

Commits on Jul 31, 2025

bail on integration tests when configs not set
peter-va
committed
9205608
remove GDC-specific sentence
peter-va
committed
07c11ec
some changes to loading metadata for non-indexed mappings
peter-va
committed
f57e50b
Small fixes for UnitTestData alignment
bcarlsenca
committed
f1937e2

Commits on Aug 1, 2025

EVSREsTAPI-651: ensure mapset loader handles first line properly (#404)
bcarlsenca
authored
cbb3ae5
add test for ncit_maps_to properties
peter-va
committed
ae3f2f9

Commits on Aug 2, 2025

Merge pull request #405 from NCIEVS/PVA/EVSRESTAPI-548-sourceTerminologyVersion
peter-va
authored
c88cfb0

Commits on Aug 4, 2025

Commits on Aug 5, 2025

Fix to support running reindexing in a shell on the mac
bcarlsenca
committed
3876c98
Merge branch 'develop' into develop-2.3
bcarlsenca
committed
684a22f

Commits on Aug 6, 2025

fix some sample tests
peter-va
committed
078a41c

Commits on Aug 7, 2025

some fixes to indexing
peter-va
committed
4f78881

Commits on Aug 8, 2025

single out owl:deprecated to support new chebi
peter-va
committed
5094ab6

Commits on Aug 12, 2025

EVSRESTAPI-407: prep data for 202508 NCIM sample
bcarlsenca
committed
f791792
fix file
bcarlsenca
committed
748f2ae
fix cuis files
bcarlsenca
committed
dce2585

Commits on Aug 15, 2025

fix unit test data pathing
peter-va
committed
71b7305
edit qualifier model to show code
peter-va
committed
3254c12
edit indexing to add code to qualifiers
peter-va
committed
9d71c05
clear out more removing-code lines
peter-va
committed
779c9d8

Commits on Aug 18, 2025

add test for viewable qualifier codes
peter-va
committed
2ba967b
spotless
peter-va
committed
2ffdf5e
one more qualifier code check
peter-va
committed
5616790

Commits on Aug 19, 2025

remove unused clearHidden functions
peter-va
committed
780028b
add qualifier sample to ncit.txt
peter-va
committed
b6c7c80
Merge pull request #406 from NCIEVS/PVA/EVSRESTAPI-641-update-for-new-chebi
peter-va
authored
45c71e7
Merge branch 'bac/EVSRESTAPI-407-ncim-update' into pva/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
committed
e97db02
sort metadata by code default
peter-va
committed
ffc6967
spotless
peter-va
committed
612c2de
tests for metadata sort by code
peter-va
committed
f3a468b

Commits on Aug 20, 2025

second ncim reset to update terminology
peter-va
committed
4814d9b
fix some mdr tests
peter-va
committed
fdaece1

Commits on Aug 22, 2025

EVSRESTAPI-407: handling part of NCIM update (#407)
bcarlsenca
authored
2c6963c
Merge branch 'master' into develop
bcarlsenca
committed
07444a0
Merge pull request #409 from NCIEVS/develop-2.3
bcarlsenca
authored
b804526

Commits on Aug 26, 2025

EVSRESTAPI-407: fixes for RRF sampling to better handle tty ranks
bcarlsenca
committed
1f33daa
update ncim sampler
peter-va
committed
407cdd2
Fix nocode issues
bcarlsenca
committed
143a18b

Commits on Aug 27, 2025

too long to properly check
peter-va
committed
36eb32f
improvements
bcarlsenca
committed
df198a6
add comment
bcarlsenca
committed
e56c3a9
Update devreset to match the files generated for NCIM/NCIM2
bcarlsenca
committed
7117d2c
Merge pull request #408 from NCIEVS/PVA/EVSRESTAPI-494-default-metadata-sort
peter-va
authored
5129e4b
fix vulnerability
peter-va
committed
e73d069
Merge pull request #410 from NCIEVS/bac/EVSRESTAPI-407-rrf-sampling
peter-va
authored
a91dc38
Merge branch 'develop' into PVA/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
committed
39ef030

Commits on Aug 28, 2025

fix mged crash on reindex in roles
peter-va
committed
640d2d7
remove logging
peter-va
committed
e5dbc53

Commits on Aug 29, 2025

Merge pull request #413 from NCIEVS/PVA/EVSRESTAPI-665-mged-crashing-reindex-roles
peter-va
authored
be9f8d7
ignore rrf roots for now
peter-va
committed
9c8e9bb
clean up mdr tests
peter-va
committed
a0e2d32
cleaned up sample tests
peter-va
committed
21fa76a
more fixed terminologies
peter-va
committed
8a97c92
fix test
peter-va
committed
16ed458
more fixed terminologies
peter-va
committed
b3a76b5
spotless
peter-va
committed
8cb4a04

Commits on Sep 5, 2025

Dss/evsrestapi 640 valueset post mode (#399)

authored
032f105
Dss/evsrestapi 658 sort param (#412)

shapirod2
and
claude
authored
b8b4cfa
EVSRESTAPI-407: fixes for NCIM sampling
bcarlsenca
committed
ec35947
Merge branch 'develop' of github.com:NCIEVS/evsrestapi into develop
bcarlsenca
committed
aae9587

Commits on Sep 9, 2025

EVSRESTAPI-596: improvements to handling stale and update flags
bcarlsenca
committed
855b055
bulk index and wait
bcarlsenca
committed
c94cc76
spotless
bcarlsenca
committed
08c78c0
add more changes and samples
peter-va
committed
7f45281
Merge branch 'PVA/EVSRESTAPI-407-update-unittestdata-ncim' into bac/EVSRESTAPI-596-reconcile-latest
bcarlsenca
committed
0014241
Merge pull request #411 from NCIEVS/PVA/EVSRESTAPI-407-update-unittestdata-ncim
peter-va
authored
8278c45
Merge branch 'develop' into bac/EVSRESTAPI-596-reconcile-latest
bcarlsenca
committed
e6aa855
Update version to 2.3.0
bcarlsenca
committed
4a700bf
fix icd9cm sampling
peter-va
committed
66479ad
add comment to icd9cm
peter-va
committed
fb23074
fix pdq and icd10
peter-va
committed
c58a83c
spotless
peter-va
committed
09afc08

Commits on Sep 12, 2025

Commits on Sep 15, 2025

EVSRESTAPI-596: improvements to reconcile latest
bcarlsenca
authored
933aae6

Commits on Sep 17, 2025

Merge pull request #417 from NCIEVS/bac/owl-deprecated-fix
bcarlsenca
authored
3d84987

Commits on Oct 1, 2025

Update CDISC form
bcarlsenca
committed
a3c96b7
Update CDISC form
bcarlsenca
committed
e3437da

Commits on Oct 3, 2025

Pva/evsrestapi 465 term form file attachment (#419)
peter-va
authored
c50054a
Dss/evsrestapi 661 ctcae6 load (#418)

shapirod2
and
claude
authored
19ff5f2
EVSRESTAPI-465: Finishing work on term form testing (#420)
bcarlsenca
authored
7ca89de

Commits on Oct 7, 2025

Commits on Oct 10, 2025

Dss/evsrestapi 664 improved partial searches (#416)
shapirod2
authored
97e757d
EVSRESTAPI-465: fix term form api paths
bcarlsenca
committed
db13ade
Update swagger to 5.18.2
bcarlsenca
committed
515c087

Commits on Oct 17, 2025

Changes to get tests passing (#422)
bcarlsenca
authored
1419f46

Commits on Oct 21, 2025

fix some tests
peter-va
committed
7631e94
fix last two tests
peter-va
committed
6a5ea74
fix most controller tests
peter-va
committed
95d36ec

Commits on Oct 22, 2025

fix last test with reflection
peter-va
committed
158f401
remove logs
peter-va
committed
eb84666

Commits on Oct 29, 2025

Dss/evsrestapi fhir test mods (#424)
shapirod2
authored
1e190ec

Commits on Oct 30, 2025

Merge pull request #423 from NCIEVS/PVA/fix-termform-tests
peter-va
authored
ef201eb

Commits on Nov 4, 2025

Work to get all tests passing. (#425)
bcarlsenca
authored
2b0a97c
Final changelog updates
bcarlsenca
committed
c10676a
CLEANUP: remove errant log entry
bcarlsenca
committed
53e0bad

Commits on Nov 5, 2025

EVSRESTAPI-664: adjust scoring for 'bone cancer'
bcarlsenca
committed
4e8d053
Small fix to clear 'extraSubsets' in terminology metadata
bcarlsenca
committed
9c8ca19
Add an exact query match (#426)
bcarlsenca
authored
9779d27

Commits on Nov 6, 2025

unhide extensions in concept (#427)
peter-va
authored
fd2a82a

Commits on Dec 4, 2025

Fix vulnerability in org.opensearch:opensearch-common (#438)
bcarlsenca
authored
1ae4188

Commits on Dec 5, 2025

EVSRESTAPI-677: Improve Term Form to use better error messages (#437)
peter-va
authored
2f57eb2
Update Changelog
bcarlsenca
committed
6809b7a

Commits on Dec 9, 2025

remove some term form requirements
peter-va
committed
5755b3e
remove now-invalid test
peter-va
committed
085efb0
Merge pull request #440 from NCIEVS/PVA/EVSRESTAPI-remove-term-form-requirements
peter-va
authored
9f1fdaa

Commits on Dec 12, 2025

EVSRESTAPI-697: small change to handle chebi decimal version (#441)
bcarlsenca
authored
30b3837

Commits on Dec 16, 2025

EVSRESTAPI-697: Fix duplicate maps now that NCIt maps are both viewable and attached to concepts (#442)
bcarlsenca
authored
4390c56

Commits on Dec 18, 2025

Commits on Dec 29, 2025

EVSRESTAPI-700: Improve remove unused indexes agorithm (#446)
bcarlsenca
authored
9595e9f

Commits on Jan 7, 2026

Commits on Feb 6, 2026

NCIM: bump memory for ncim-part.sh for 202602
bcarlsenca
committed
d688cac

Commits on Feb 18, 2026

RDFBROWSER-586: Better handling of mapping source/target terminology names (#458)
bcarlsenca
authored
ffe2879

Commits on Feb 20, 2026

EVSRESTAPI-708: support default blank 'mailRecipient' property and use the email from the form (#460)
bcarlsenca
authored
ff39e09