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Jacob Epstein edited this page Sep 12, 2025
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Welcome to the official documentation for ProtPipe. This
project provides a powerful suite of tools for analyzing proteomics
data.
To accommodate different user needs, this documentation is split into two main paths: one for using the no-code Shiny Web Application, and another for developers using the R Package directly.
Please select the guide that best fits your needs.
|
For biologists, researchers, and anyone who wants to analyze their data through an easy-to-use graphical interface without writing any code. |
For bioinformaticians, data scientists, and R users who want to integrate these tools into their own scripts and analysis pipelines. |
The following pages contain information relevant for all users:
- Input Data Format: (Start Here!) This page explains the required file formats for your data. Please read this carefully before using the app or package.
- Frequently Asked Questions (FAQ): Find answers to common questions and troubleshooting tips.
- How to Cite: Instructions on how to properly cite this work in your publications.