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How to filter DIA data missing values globally and missing values in one condition

Status: Open.

#34 In Nesvilab/FragPipeAnalystR;

· talia-blip opened on Mar 10, 2026

Support DIA peptide report

enhancementNew feature or requestNew feature or request

Status: Open.

#28 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Jun 21, 2025

Instructions needed for some common operations

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#26 In Nesvilab/FragPipeAnalystR;

· aimamoto opened on May 28, 2025

Check if experiment_annotation and quant table match before parsing the data

enhancementNew feature or requestNew feature or request

Status: Open.

#25 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on May 16, 2025

Results from GSEA implementation is not complete

enhancementNew feature or requestNew feature or request

Status: Open.

#23 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Apr 7, 2025

plot_pca needs to support more than 6 replicates

Status: Open.

#20 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Jan 22, 2025

Add horizontal line and vertical threshold lines to volcano plot

enhancementNew feature or requestNew feature or request

Status: Open.

#19 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Jan 16, 2025

Report generation

enhancementNew feature or requestNew feature or request

Status: Open.

#17 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Nov 27, 2024

Check experiment annotation file

enhancementNew feature or requestNew feature or request

Status: Open.

#16 In Nesvilab/FragPipeAnalystR;

· hsiaoyi0504 opened on Nov 27, 2024

LFQ phosphoproteomics data

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#4 In Nesvilab/FragPipeAnalystR;

· solabthomas opened on Apr 19, 2024

Q: Phosphoproteomics data

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#2 In Nesvilab/FragPipeAnalystR;

· kaupuks opened on Mar 24, 2024