[enhancement] Clean POSYDON repository

.github/workflows/continuous_integration.yml

@@ -25,29 +25,14 @@ jobs:
       with:
         python-version: ${{ matrix.python-version }}
 
-    - name: Install POSYDON without extras
+    - name: Install POSYDON with test dependencies
       run: |
         python -m pip install --upgrade pip
-        pip install .
+        pip install .[test]
 
     - name: Run all tests in posydon/unit_tests
       run: |
-        # python -m pip install --upgrade pip
-        # pip install .
-        pip install pytest
-        pip install pytest-cov
         export PATH_TO_POSYDON=./
         export PATH_TO_POSYDON_DATA=./posydon/unit_tests/_data/
         export MESA_DIR=./
-        python -m pytest posydon/unit_tests/ \
-                         --cov=posydon.config \
-                         --cov=posydon.utils \
-                         --cov=posydon.grids \
-                         --cov=posydon.popsyn.IMFs \
-                         --cov=posydon.popsyn.norm_pop \
-                         --cov=posydon.popsyn.distributions \
-                         --cov=posydon.popsyn.star_formation_history \
-                         --cov=posydon.CLI \
-                         --cov-branch \
-                         --cov-report term-missing \
-                         --cov-fail-under=100
+        pytest # run and coverage parameters are defined in pyproject.toml

.gitignore

@@ -70,6 +70,7 @@ instance/
 # Sphinx documentation
 docs/_build/
 docs/_tmp/
+docs/_source/_build/
 docs/_source/api_reference
 docs/checkautodoc
 *.h5

.gitmodules

@@ -1,9 +1,3 @@
 [submodule "grid_params/POSYDON-MESA-INLISTS"]
 	path = grid_params/POSYDON-MESA-INLISTS
 	url = https://github.com/POSYDON-code/POSYDON-MESA-INLISTS.git
-[submodule "data/POSYDON_data"]
-	path = data/POSYDON_data
-	url = https://github.com/POSYDON-code/POSYDON_data.git
-[submodule "posydon/tests/data/POSYDON-UNIT-TESTS"]
-	path = posydon/tests/data/POSYDON-UNIT-TESTS
-	url = https://github.com/POSYDON-code/POSYDON-UNIT-TESTS.git

conda/meta.yaml

@@ -1,9 +1,8 @@
 {% set name = "posydon" %}
-{% set version = "2.2.8" %}
 
 package:
   name: "{{ name|lower }}"
-  version: "{{ version }}"
+  version: {{ GIT_DESCRIBE_TAG }}
 
 source:
   path: ..
@@ -17,7 +16,8 @@ requirements:
   host:
     - pip
     - python==3.11
-    - setuptools>=38.2.5
+    - setuptools>=76.0.0
+    - setuptools-scm>=8.0
 
   run:
     - python==3.11

posydon/__init__.py

@@ -1,6 +1,11 @@
-from ._version import get_versions
+from importlib.metadata import PackageNotFoundError, version
+
+try:
+    __version__ = version("posydon")
+except PackageNotFoundError:
+    # Package is not installed
+    __version__ = "unknown"
 
-__version__ = get_versions()['version']
 __author__ = "Tassos Fragos <Anastasios.Fragkos@unige.ch>"
 __credits__ = [
     "Emmanouil Zapartas <ezapartas@gmail.com>",
@@ -19,5 +24,3 @@
     "Ying Qin <<yingqin2013@hotmail.com>",
     "Aaron Dotter <aaron.dotter@gmail.com>",
 ]
-
-del get_versions