Skip to content

Add more EPG signal models#973

Merged
fzimmermann89 merged 9 commits intomainfrom
mese
Apr 15, 2026
Merged

Add more EPG signal models#973
fzimmermann89 merged 9 commits intomainfrom
mese

Conversation

@fzimmermann89
Copy link
Copy Markdown
Member

@fzimmermann89 fzimmermann89 commented Mar 6, 2026

  • Add multi echo spin echo / tse sequence (used for t2 mapping in paper by @rkcatarina)
  • Add DeliCS neuro mrf signal model (https://zenodo.org/records/7697373)
  • broadcast result to input shapes. inside the epg simulator, we use the repeat removal logic, but both @rkcatarina and the dictionarymatchingop expect that the result shape to match the input shapes as with all other signal models.

@fzimmermann89 fzimmermann89 changed the title EPG signal models Add more EPG signal models Mar 6, 2026
@github-actions
Copy link
Copy Markdown
Contributor

github-actions Bot commented Mar 6, 2026

Coverage

Coverage Report
FileStmtsMissCoverMissing
src/mrpro
   _version.py6267%7–8
src/mrpro/algorithms/csm
   inati.py25196%43
src/mrpro/algorithms/dcf
   dcf_voronoi.py55493%15, 55–56, 89
src/mrpro/algorithms/optimizers
   adam.py30680%108, 125–129
   cg.py52198%139
   pdhg.py81396%180–181, 187
   pgd.py53492%108, 153–156
src/mrpro/algorithms/reconstruction
   DirectReconstruction.py28293%62, 78
   Reconstruction.py47491%54–56, 122
   RegularizedIterativeSENSEReconstruction.py51296%123, 152
   TotalVariationRegularizedReconstruction.py52492%104, 110, 127, 130
src/mrpro/data
   AcqInfo.py165796%49, 56, 134–135, 137, 243, 367
   Dataclass.py3102692%59, 320, 336, 402, 460–462, 475, 570, 590–591, 593, 608–609, 611, 658–659, 664–665, 850–851, 876, 883, 888–889, 891
   DcfData.py33197%62
   EncodingLimits.py97397%37, 127, 130
   IData.py1781293%138, 155–156, 217–225, 258, 304, 322
   IHeader.py174895%49, 98–101, 284, 288, 292, 296
   KData.py2302490%122–123, 138, 145, 156–167, 178, 186, 197, 236, 258–260, 307–308, 380, 546, 548, 620
   KHeader.py1761393%115–121, 148, 196, 203–204, 231–238
   KNoise.py22195%44
   KTrajectory.py95397%163, 165, 185
   QData.py32197%43
   Rotation.py7374294%104, 202, 339, 437, 481, 499, 586, 588, 597, 634, 636, 699, 776, 781, 784, 799, 816, 821, 897, 1085, 1090, 1093, 1117, 1121, 1145, 1265, 1267, 1275–1276, 1340, 1422, 1626, 1633–1635, 1694, 1790, 1942, 1977, 1981, 2156, 2177
   SpatialDimension.py1501987%34, 103, 146, 158, 278–280, 293–295, 329, 347, 360, 373, 386, 399, 408–409, 437
src/mrpro/data/traj_calculators
   KTrajectoryCalculator.py26292%84, 95
   KTrajectoryCartesian.py31487%129–132, 136
   KTrajectoryIsmrmrd.py19195%57
   KTrajectorySpiral2D.py571377%63–66, 69, 71, 73, 75, 77, 105, 107, 134–136
src/mrpro/operators
   AveragingOp.py38295%73, 115
   CartesianSamplingOp.py112496%152, 191, 266, 387
   ConjugateGradientOp.py89792%62, 64, 100, 106, 228, 230, 233
   ConstraintsOp.py85495%78, 80, 250, 255
   EndomorphOperator.py28293%71, 77
   FiniteDifferenceOp.py29293%40, 126
   FourierOp.py105991%85–87, 192–193, 212, 257, 321, 326
   Functional.py70297%116, 118
   GridSamplingOp.py1651591%72–73, 82–83, 90–91, 94, 96, 98, 282, 290–291, 306, 312–313
   LinearOperator.py202697%217, 255, 296, 305, 313, 330
   LinearOperatorMatrix.py1741989%99, 136, 169, 178, 183, 192–195, 208–211, 219–220, 225–226, 238, 347, 377, 404
   MultiIdentityOp.py16288%58, 63
   NonUniformFastFourierOp.py1981095%72, 99, 221, 223, 261, 263, 340, 397, 471, 476
   Operator.py88397%82, 115, 125
   PatchOp.py49394%93, 129, 144
   ProximableFunctionalSeparableSum.py44393%118, 213, 224
   SliceProjectionOp.py1781094%45, 62, 64, 70, 154, 180, 216, 253, 290, 330
   WaveletOp.py119397%184, 228, 254
   ZeroPadOp.py18194%30
src/mrpro/operators/functionals
   SSIM.py73790%60–80, 82, 86, 114, 147
src/mrpro/operators/models
   EPG.py2561993%31–32, 283, 288, 304–306, 326–327, 332, 356, 361, 386, 391, 545, 599, 738, 755, 782
src/mrpro/phantoms
   EllipsePhantom.py43295%66, 131
   brainweb.py2974087%276, 290–294, 349–359, 398, 454–457, 479–480, 485–486, 488–489, 493, 501, 508–509, 550, 621, 624–625, 644, 653–656, 667, 669, 700–701, 715, 723
   fastmri.py1061091%50–51, 59, 65, 162, 169–171, 174–175, 189
   m4raw.py74495%58–59, 74, 76
   mdcnn.py71790%58, 62–63, 70, 82, 88, 135
src/mrpro/utils
   RandomGenerator.py1561590%23–24, 36, 38, 188, 212, 428, 446, 528, 799, 829–832, 895, 898
   ema.py42490%49, 74, 78, 82
   filters.py61198%46
   indexing.py177199%321
   pad_or_crop.py39685%40, 43, 46, 49, 66, 73
   reshape.py1531093%176, 370, 482–484, 505, 508–509, 515, 530
   slice_profiles.py49688%21, 37, 119–122, 155
   split_idx.py10280%43, 47
   summarize.py57689%40–41, 70–73, 81
   unit_conversion.py721579%34, 44, 51, 53, 62, 69, 71, 78, 80, 89, 100, 121, 123, 144, 146
TOTAL796547594% 

Tests Skipped Failures Errors Time
3054 0 💤 0 ❌ 0 🔥 2m 25s ⏱️

@github-actions
Copy link
Copy Markdown
Contributor

github-actions Bot commented Mar 6, 2026

📚 Documentation

📁 Download as zip
🔍 View online

Comment thread src/mrpro/operators/models/NeuroMRF.py Outdated
@fzimmermann89 fzimmermann89 added the pre-commit.ci autofix run autofix in this PR label Mar 25, 2026
@pre-commit-ci pre-commit-ci Bot removed the pre-commit.ci autofix run autofix in this PR label Mar 25, 2026
@fzimmermann89 fzimmermann89 enabled auto-merge (squash) March 25, 2026 14:14
@fzimmermann89 fzimmermann89 requested a review from ckolbPTB March 25, 2026 14:14
@fzimmermann89 fzimmermann89 added the pre-commit.ci autofix run autofix in this PR label Mar 25, 2026
@pre-commit-ci pre-commit-ci Bot removed the pre-commit.ci autofix run autofix in this PR label Mar 25, 2026
@fzimmermann89 fzimmermann89 merged commit 4b75526 into main Apr 15, 2026
25 checks passed
@fzimmermann89 fzimmermann89 deleted the mese branch April 15, 2026 09:03
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants