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Precompute-update-docker-python #571

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c2a38b3
Updated docker image, Python version
bengtl Dec 12, 2024
01cb520
1.7.2 -> 1.7.3-dev0
bengtl Dec 12, 2024
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2 changes: 1 addition & 1 deletion visualization/precompute-slide-tool/.bumpversion.cfg
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@@ -1,5 +1,5 @@
[bumpversion]
current_version = 1.7.2
current_version = 1.7.3-dev0
commit = False
tag = False
parse = (?P<major>\d+)\.(?P<minor>\d+)\.(?P<patch>\d+)(\-(?P<release>[a-z]+)(?P<dev>\d+))?
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2 changes: 1 addition & 1 deletion visualization/precompute-slide-tool/Dockerfile
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@@ -1,4 +1,4 @@
FROM polusai/bfio:2.1.9
FROM polusai/bfio:2.4.5

# environment variables defined in polusai/bfio
ENV EXEC_DIR="/opt/executables"
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2 changes: 1 addition & 1 deletion visualization/precompute-slide-tool/README.md
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# Polus Precompute Slide Plugin (1.7.2)
# Polus Precompute Slide Plugin (1.7.3-dev0)

This WIPP plugin generates image pyramids in multiple viewing formats. Each
output has a special filepattern variable that will be used to combine images
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2 changes: 1 addition & 1 deletion visualization/precompute-slide-tool/VERSION
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@@ -1 +1 @@
1.7.2
1.7.3-dev0
2 changes: 1 addition & 1 deletion visualization/precompute-slide-tool/ict.yml
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Expand Up @@ -68,4 +68,4 @@ ui:
key: inputs.filePattern
title: 'Image Pattern: '
type: text
version: 1.7.2
version: 1.7.3-dev0
4 changes: 2 additions & 2 deletions visualization/precompute-slide-tool/plugin.json
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@@ -1,7 +1,7 @@
{
"name": "Precompute Slide",
"version": "1.7.2",
"containerId": "polusai/precompute-slide-tool:1.7.2",
"version": "1.7.3-dev0",
"containerId": "polusai/precompute-slide-tool:1.7.3-dev0",
"baseCommand": [
"python3",
"-m",
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11 changes: 6 additions & 5 deletions visualization/precompute-slide-tool/pyproject.toml
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[tool.poetry]
name = "polus-images-visualization-precompute-slide"
version = "1.7.2"
version = "1.7.3-dev0"
description = "Polus Precompute Slide Plugin."
authors = [
"Madhuri Vihani <Madhuri.Vihani@nih.gov>",
"Nick Schaub <Nick.Schaub@nih.gov>",
"Antoine Gerardin <antoine.gerardin@nih.gov>",
"Najib Ishaq <najib.ishaq@nih.gov>"
"Najib Ishaq <najib.ishaq@nih.gov>",
"Bengt Ljungquist <bengt.ljungquist@nih.gov>"
]
readme = "README.md"
packages = [ { include = "polus", from = "src" } ]

[tool.poetry.dependencies]
python = ">=3.9,<3.12"
python = ">=3.10,<3.12"
typer = "^0.7.0"
numpy = "~1.25.2"
bfio = { version = "2.3.3", extras = ["all"] }
bfio = { version = "2.4.5", extras = ["all"] }
preadator = "0.4.0.dev2"
filepattern = "^2.0.4"
imageio = "^2.33.1"
imageio = "^2.36.1"

[tool.poetry.group.dev.dependencies]
zarr = "^2.16.1"
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