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DICOM Text SR Writer Updates #578

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Merged
MMelQin merged 1 commit into from
Jun 9, 2026
Merged

DICOM Text SR Writer Updates #578

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4 changes: 2 additions & 2 deletions monai/deploy/operators/dicom_seg_writer_operator.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Copyright 2021-2025 MONAI Consortium
# Copyright 2021-2026 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
Expand Down Expand Up @@ -382,7 +382,7 @@ def create_dicom_seg(self, image: np.ndarray, dicom_series: DICOMSeries, output_
seg_purpose_of_reference_code = Dataset()
seg_purpose_of_reference_code.CodeValue = "Newcode1"
seg_purpose_of_reference_code.CodingSchemeDesignator = "99IHE"
seg_purpose_of_reference_code.CodeMeaning = '"Processing Algorithm'
seg_purpose_of_reference_code.CodeMeaning = "Processing Algorithm"
seq_purpose_of_reference_code.append(seg_purpose_of_reference_code)

seq_contributing_equipment = PyDicomSequence()
Expand Down
7 changes: 6 additions & 1 deletion monai/deploy/operators/dicom_text_sr_writer_operator.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Copyright 2021-2022 MONAI Consortium
# Copyright 2021-2026 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
Expand Down Expand Up @@ -96,6 +96,7 @@ def __init__(
# "SR" for Structured Report.
# Media Storage SOP Class UID, e.g.,
# "1.2.840.10008.5.1.4.1.1.88.11" for Basic Text SR Storage
# "1.2.840.10008.5.1.4.1.1.88.22" for Enhanced SR
# "1.2.840.10008.5.1.4.1.1.104.1" for Encapsulated PDF Storage,
# "1.2.840.10008.5.1.4.1.1.88.34" for Comprehensive 3D SR IOD
# "1.2.840.10008.5.1.4.1.1.66.4" for Segmentation Storage
Expand Down Expand Up @@ -192,8 +193,12 @@ def write(self, content_text, dicom_series: Optional[DICOMSeries], output_dir: P
)

# SR specific
ds.CompletionFlag = "COMPLETE" # Estimated degree of completeness.
ds.VerificationFlag = "UNVERIFIED" # Not attested by a legally accountable person.

ds.ReferencedPerformedProcedureStepSequence = Sequence([]) # Required by SR Document Series
ds.PerformedProcedureCodeSequence = Sequence([]) # Required by SR Document General

# Per recommendation of IHE Radiology Technical Framework Supplement
# AI Results (AIR) Rev1.1 - Trial Implementation
# Specifically for Qualitative Findings,
Expand Down
8 changes: 4 additions & 4 deletions monai/deploy/operators/dicom_utils.py
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
# Copyright 2022 MONAI Consortium
# Copyright 2022-2026 MONAI Consortium
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
Expand Down Expand Up @@ -198,8 +198,8 @@

# File meta info data set
file_meta = Dataset()
file_meta.FileMetaInformationGroupLength = 198
file_meta.FileMetaInformationVersion = bytes("01", "utf-8") # '\x00\x01'
# file_meta.FileMetaInformationGroupLength = 198

Check warning on line 201 in monai/deploy/operators/dicom_utils.py

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SonarQubeCloud / SonarCloud Code Analysis

Remove this commented out code. 


See more on https://sonarcloud.io/project/issues?id=Project-MONAI_monai-deploy-app-sdk&issues=AZ6p8Kwh58x8k7pgrJev&open=AZ6p8Kwh58x8k7pgrJev&pullRequest=578
file_meta.FileMetaInformationVersion = b"\x00\x01" # '\x00\x01'

file_meta.MediaStorageSOPClassUID = sop_class_uid
file_meta.MediaStorageSOPInstanceUID = my_sop_instance_uid
Expand Down Expand Up @@ -282,7 +282,7 @@
ds_purpose_of_reference_code = Dataset()
ds_purpose_of_reference_code.CodeValue = "Newcode1"
ds_purpose_of_reference_code.CodingSchemeDesignator = "99IHE"
ds_purpose_of_reference_code.CodeMeaning = '"Processing Algorithm'
ds_purpose_of_reference_code.CodeMeaning = "Processing Algorithm"
seq_purpose_of_reference_code.append(ds_purpose_of_reference_code)

seq_contributing_equipment = Sequence()
Expand Down
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