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1. GliomaAtlas3D GliomaAtlas3D Public

   A Shiny web app for visualizing genomic data from brain tumors in 3D.

   R 7 4

2. 3DGliomaAnalysis 3DGliomaAnalysis Public

   All tidy data, analyses, and output for Hilz et al. 3D Glioma Atlas manuscript.

   R 1

3. exomeAdvancedVariantFiltering exomeAdvancedVariantFiltering Public

   A post-mutation calling pipeline for additional variant filtering.

   Python

4. exomeQualityPlots exomeQualityPlots Public

   Scripts to generate plots of exome library and mutation calling quality stats.

   R 2 1

5. miRsift miRsift Public

   Sifting through high-throughput sequencing data to identify miRNAs with a regulatory impact.

   R 2

6. facets facets Public

   Scripts to run FACETS (https://github.com/mskcc/facets) on Costello lab exome data.

   Python 1