Fix for OrdinaryDiffEq 7 / SciMLBase 3 / RecursiveArrayTools 4 (complements #565)#566
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ChrisRackauckas merged 1 commit intoJun 4, 2026
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Adapts MethodOfLines to the breaking changes that master already resolves to
(OrdinaryDiffEq 7.0.0, SciMLBase 3.x, RecursiveArrayTools 4.x), fixing a
pre-existing master CI failure across many test groups.
Solution interface (src/interface/solution/common.jl): define length/size/
ndims/axes/firstindex/lastindex for the MOL PDETimeSeriesSolution in terms of
its saved time points. PDETimeSeriesSolution is an AbstractVectorOfArray whose
`u` field is a Dict{Num,Array}; RAT 4's generic size iterates `u` expecting a
vector of arrays and errors with `size(::Pair, ::Int)`. For single-variable
solutions the generic path silently returned 1 (the dv count) instead, so
`for i in 1:length(sol)` loops were quietly only checking i = 1.
Solver re-exports: OrdinaryDiffEq 7 no longer re-exports most solver names from
`using OrdinaryDiffEq`. Import the ones the tests use from their sub-packages
(Rodas4/Rodas4P/Rosenbrock32 from OrdinaryDiffEqRosenbrock, TRBDF2 from
OrdinaryDiffEqSDIRK, SSPRK33 from OrdinaryDiffEqSSPRK, Euler/SplitEuler from
OrdinaryDiffEqLowOrderRK) and add the sub-packages to the test deps.
SciMLBase namespace: `using OrdinaryDiffEq` (v7) no longer brings SciMLBase into
scope, so tests calling `SciMLBase.successful_retcode`/`SciMLBase.NullParameters`
need an explicit `using SciMLBase`.
Test 03 of MOL_1D_Linear_Diffusion: the `sum(u) ~= 0 atol=1e-10` conservation
check was previously only evaluated at i=1 due to the broken length(sol). With
length fixed it runs at every time; the edge-aligned grid's rectangle-rule sum
drifts to ~1e-7 (center-aligned stays ~1e-11 at identical Tsit5 tolerances), so
the tolerance is relaxed to 1e-6 with an explanatory comment.
Co-Authored-By: Chris Rackauckas <accounts@chrisrackauckas.com>
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Test 03 of MOL_1D_Linear_Diffusion checks that the diffusion equation with homogeneous Neumann BCs conserves the spatial integral of u (here ∫₀^π cos(x) dx = 0). It previously used `sum(u)`, a rectangle rule that on the edge-aligned grid (nodes offset half a step outside the domain) carries an O(Δx) boundary bias and drifts to ~1e-7, which forced SciML#566 to loosen the assertion from atol=1e-10 to atol=1e-6. Integrate instead with composite trapezoidal weights built from the actual grid spacing (interior nodes get the half-spacing on each side, endpoints a single half-spacing), correct on both the center-aligned and the half-step edge-aligned grids and on non-uniform grids. The trapezoidal integral conserves down to the Tsit5 time-integration error, not the spatial quadrature error: measured max|∫u dx| over the trajectory is ~4e-13 (center) / ~6e-10 (edge) at the default Tsit5 tolerances, and both fall to ~1e-15 when the solver tolerance is tightened to 1e-12 — confirming the residual is bounded by the time integrator, not a real conservation defect. The assertion is therefore restored to a strict atol=1e-9 (1000x tighter than SciML#566's 1e-6, with headroom above the measured 6e-10 edge residual) and now compares against the initial integral so it works regardless of the analytic value. Verified locally with `GROUP=Diffusion`: 289/289 pass, both grid alignments. Co-Authored-By: Chris Rackauckas <accounts@chrisrackauckas.com>
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…vation-quadrature Trapezoidal conservation metric for 1D diffusion (restores strict tol, supersedes #566 loosening)
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Fix MethodOfLines for OrdinaryDiffEq 7 / SciMLBase 3 / RecursiveArrayTools 4
Please ignore until reviewed by @ChrisRackauckas.
This fixes a pre-existing
masterCI failure on theDiffusion,Diffusion_NU,Nonlinear_Diffusion(_NU),Convection(_WENO),DAE,Wave_Eq_Staggeredand relatedtest groups.
masteralready resolves to OrdinaryDiffEq 7.0.0 / SciMLBase 3.17 /RecursiveArrayTools 4.3 via the loose
OrdinaryDiffEq = "6, 7"/SciMLBase = "2, 3"compat, so the breakage reproduces on a clean checkout independently of any dependabot
bump. It also unblocks the DifferentialEquations-8 side of #564 and complements #565
(the DomainSets 0.8 fix). No DomainSets changes are bundled here.
Two root causes
1.
length(sol)/size(sol)on aPDETimeSeriesSolution(SciMLBase 3 / RAT 4)PDETimeSeriesSolution <: AbstractTimeseriesSolution <: AbstractVectorOfArray. MoL storesthe solution
uas aDict{Num, Array}. RAT 4's genericBase.size(::AbstractVectorOfArray)iteratessol.uexpecting a vector of arrays andcalls
size(u, d)on each element — but iterating theDictyieldsPairs, givingMethodError: no method matching size(::Pair{Num, Matrix{Float64}}, ::Int64). Forsingle-variable solutions this silently returned
1(the number of dvs) instead oferroring, so
for i in 1:length(sol)loops were quietly only checkingi = 1.Fix (
src/interface/solution/common.jl): define the array interface for the MOLPDETimeSeriesSolutionin terms of its saved time points —length(sol) == length(sol.t),size(sol) == (length(sol.t),),ndims(sol) == 1,plus
axes/firstindex/lastindex. This restores the intended time-series semanticsused throughout the tests (
for i in 1:length(sol)).2. OrdinaryDiffEq 7 stopped re-exporting most solver names
using OrdinaryDiffEq(v7) only re-exports a curated subset (Tsit5,Vern6-9,Rosenbrock23,Rodas5P,FBDF,DefaultODEAlgorithm). Solvers used by the test suitethat are no longer re-exported now live in sub-packages:
Rodas4,Rodas4P,Rosenbrock32OrdinaryDiffEqRosenbrockTRBDF2OrdinaryDiffEqSDIRKSSPRK33OrdinaryDiffEqSSPRKEuler,SplitEulerOrdinaryDiffEqLowOrderRKFix: add explicit
using OrdinaryDiffEq<SubPkg>: <Solver>imports in the affected testfiles and add the four sub-packages to the test-only
[extras]/[targets]inProject.toml.src/itself references no OrdinaryDiffEq solver names, so no sourcechange is needed for this half.
Note on the
Test 03conservation toleranceFixing
length(sol)exposed a latent test bug inMOL_1D_Linear_Diffusion.jlTest 03(homogeneous Neumann diffusion). The assertion
sum(u) ≈ 0 atol = 1e-10was previouslyonly evaluated at
i = 1(initial condition, exact to ~1e-14) because of the brokenlength. Withlength(sol)corrected, it now runs at every saved time. Thesum(u)is arectangle-rule proxy for the conserved integral
∫u dx = 0; the edge-aligned gridplaces nodes offset by half a step, so its rectangle sum drifts to ~1e-7 at the default
Tsit5 tolerances, while the center-aligned grid stays ~1e-11 at the same tolerances
(verified locally). The drift is therefore a property of the crude quadrature on the
edge-aligned grid, not solver noise and not a discretization regression. The tolerance is
loosened to
1e-6(still verifying conservation to six digits) with an explanatorycomment.
Local verification (Julia 1.11, env resolves OrdinaryDiffEq 7.0.0 / SciMLBase 3.17 / RAT 4.3 / MTK 11.26)
Baseline on clean
master(Diffusiongroup): 99 passed, 6 errored — exactly3×
UndefVarError: Rodas4and 3×MethodError: size(::Pair{Num,Matrix}, ::Int).After this PR, run per CI group (
GROUP=… Pkg.test()):Remaining failure — out of scope here, NOT silenced
DAE(MOL_1D_PDAE.jl),MOL_Interface1(MOLtest1.jl, "Rearranged Robin") andHigher_Order(MOL_1D_HigherOrder.jl, KdV soliton) still error withThis is a separate SciMLBase-3 behavior change: the default
initializealgnowruns a strict
CheckInitthat rejects MoL's discretized initial condition (the BC /algebraic-constraint rows are not satisfied to 1e-6). On clean
masterthese sametests error earlier with
UndefVarError: Rodas4/UndefVarError: SciMLBase, so theinit failure was previously masked. Fixing it properly requires either MoL generating a
consistent IC for the constrained rows or threading an
initializealg(
BrownFullBasicInit, which would add anOrdinaryDiffEqNonlinearSolvetest dep) —deliberately left for a separate focused PR rather than silenced here.
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