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Update alignToMeth.cpp #5

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Update alignToMeth.cpp #5

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cb9b7b7
Update alignToMeth.cpp
alexyfyf Jul 20, 2020
c1eafba
Update main.cpp
alexyfyf Sep 11, 2020
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2 changes: 1 addition & 1 deletion src/alignToMeth.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -27,7 +27,7 @@ int byread(BamTools::BamAlignment al,
al.GetTag("XM:Z:", Meth);
std::string strand="+";
if (al.IsReverseStrand()) {
std::reverse(Meth.begin(), Meth.end());
// std::reverse(Meth.begin(), Meth.end());
strand="-";
}
for (int i = 0; i < al.QueryBases.size(); i++) {
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2 changes: 1 addition & 1 deletion src/main.cpp
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Expand Up @@ -25,7 +25,7 @@ int main(int argc, const char * argv[])
//default distance cutoff: 72 // trying to match seq length
int d=72;
//default read coverage: 60
int cov=60;
int cov=10;

std::cerr << "Default program paramters for methclone: \nMax loci width: " << d << " bp" << std::endl;
std::cerr << "Min methylation difference cutoff: " << m << "%" << std::endl;
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