v1.1.4

[1.1.4] - 2026-07-03

Changed

• Python versions updated

• GH actions activated for dev branch

• Configure GHA to run in Python versions (minimun and last)

• Genome installation during test changed to CLI

• Genome installation using install_genome.py has been disabled

• CLI controller has been corrected for parsing comma sepparated arguments in exclude_signature_subgroups variable

• str2list function tested

• Test documentation wiki

• tests moved for rendering documentation

• Tests has been restored

• security issue in dependences fixed

• test gh pages from GH actions

• Documentation index corrected

• Style updated

• Documentation has been updated

• Advanced mode specified

• Readme has been simplified

• Refactor README structure and add documentation sections

• Update README

• Documentation badge has been corrected

• Figure moved to assets

• update: new autorelease mecanism has been created

• automatic release updated

• test: autorelease workflow has been corrected

Fixed

• Fix sample reconstruction plots to support custom signature databases instead of skipping them

v1.1.3

What's Changed

• Python 312 fix p2 by @mdbarnesUCSD in #195

Full Changelog: v1.1.2...v1.1.3

v1.1.2

What's Changed

• Ci switch by @mdbarnesUCSD in #194

Full Changelog: v1.1.1...v1.1.2

v1.1.1

What's Changed

• v1.1.1: Added missing COSMIC v3.5 signature files (exome versions, mm… by @mdbarnesUCSD in #193

Full Changelog: v1.1.0...v1.1.1

v1.1.0

What's Changed

• v1.1.0: Support for COSMIC v3.5 signatures and updated Tobacco_signat… by @mdbarnesUCSD in #192

Full Changelog: v1.0.4...v1.1.0

v1.0.4

What's Changed

• Update README.md to include correct "exclude_signature_subgroups", re… by @rvangara in #188
• fix(build): missing rn7 and mm39 reference signatures in package by @mdbarnesUCSD in #190
• feat: Preserve signature names + improve high-res decomposition stability by @mdbarnesUCSD in #189
• Development by @mdbarnesUCSD in #191

Full Changelog: v1.0.3...v1.0.4

v1.0.3

What's Changed

• Add parameter to disable automatic background signature addition by @mdbarnesUCSD in #186
• v1.0.3: Add parameter to toggle automatic background signature addition by @mdbarnesUCSD in #187

Full Changelog: v1.0.2...v1.0.3

v1.0.2

What's Changed

• v1.0.2: Add automated Docker build and publish pipeline by @mdbarnesUCSD in #184

Full Changelog: v1.0.1...v1.0.2

v1.0.1

What's Changed

• v1.0.1: Refine CPU parameter logic to pass directly instead of via d… by @mdbarnesUCSD in #183

Full Changelog: v1.0.0...v1.0.1

v1.0.0

What's Changed

• Merge spa-sep25-cleanup into main for v1.0.0 update by @mdbarnesUCSD in #182
• Parallelized and added cpu parameter

Full Changelog: v0.2.6...v1.0.0