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Fix rpy2 installation issue #68

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Merged
mfasiolo merged 2 commits into from
Mar 20, 2026
Merged

Fix rpy2 installation issue #68

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9c40c4b
fix: ensure rpy2 is installed via conda to avoid compilation errors
Jan 28, 2026
fcc8b18
docs: update installation instructions to ensure stable rpy2 setup
Jan 28, 2026
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5 changes: 3 additions & 2 deletions docs/index.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -23,17 +23,18 @@
"- Install ``conda`` e.g. [miniforge](https://github.com/conda-forge/miniforge)\n",
"\n",
"```bash\n",
"conda create --name my_env python r-base r-mgcv\n",
"conda create --name my_env rpy2 python r-base r-mgcv\n",
"conda activate my_env\n",
"python -m pip install pymgcv\n",
"```\n",
"\n",
"**Using pixi**:\n",
"\n",
"- Install [pixi](https://github.com/prefix-dev/pixi)\n",
"\n",
"```bash\n",
"pixi init\n",
"pixi add python r-base r-mgcv\n",
"pixi add rpy2 python r-base r-mgcv\n",
"pixi add --pypi pymgcv\n",
"pixi shell\n",
"```\n",
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1 change: 1 addition & 0 deletions pyproject.toml
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Expand Up @@ -62,6 +62,7 @@ convention = "google"
r-base = ">=4.4.3,<4.5"
r-mgcv = ">=1.9_3,<2"
xz = ">=5.8.1,<6"
rpy2 = ">=3.5.0" # install from conda


[tool.pixi.pypi-options]
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