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build_site.yml
145 workflow runs
145 workflow runs

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Fix legacy notebook edge cases exposed by MWE sample sheets, compressed FASTQ names, lookup remapping, and Marchenko k=1 Rebuild website and manuscript #154: Pull request #1317 closed by gaow
49s
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Update susie_twas Rebuild website and manuscript #153: Pull request #1318 closed by gaow
54s
54s
Fixed bugs Rebuild website and manuscript #152: Pull request #1316 closed by gaow
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Fixed bug in lines 1284-1285 Rebuild website and manuscript #151: Pull request #1315 closed by gaow
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Rewrite getting-started: SoS conda env + pixi install, updated analys… Rebuild website and manuscript #150: Pull request #1314 closed by gaow
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Update getting started page with links Rebuild website and manuscript #149: Pull request #1313 closed by gaow
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Create a pipeline to export finemapping results with automated QC(WIP) Rebuild website and manuscript #148: Pull request #1187 closed by gaow
48s
48s
fix p_diff_thresh and gwas_n sample size Rebuild website and manuscript #147: Pull request #1311 closed by gaow
55s
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Update getting started page with pixi-based setup Rebuild website and manuscript #146: Pull request #1312 closed by gaow
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Add trans_geno_chromosome parameter and improve trans-QTL pipeline Rebuild website and manuscript #145: Pull request #1310 closed by gaow
47s
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Update quantile QTL and qTWAS weight pipeline with new screening parameters Rebuild website and manuscript #144: Pull request #1305 closed by gaow
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Only keep U info in .afreq Rebuild website and manuscript #143: Pull request #1309 closed by gaow
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Remove redundant prodedures and columns Rebuild website and manuscript #142: Pull request #1308 closed by gaow
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Record the min and max to recover original U Rebuild website and manuscript #141: Pull request #1307 closed by gaow
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initial_scaling Rebuild website and manuscript #140: Pull request #1306 closed by gaow
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Accommodate the susie-ash and susie-inf into mnm_regression.ipynb Rebuild website and manuscript #139: Pull request #1269 closed by gaow
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remove plink2 outputs compression Rebuild website and manuscript #138: Pull request #1304 closed by gaow
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added pvar, psam and pgen compression Rebuild website and manuscript #137: Pull request #1303 closed by gaow
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update x_varcutoff and maf_cutoff for mnm pipeline Rebuild website and manuscript #136: Pull request #1301 closed by gaow
52s
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Fix merge_chrom workflow bug Rebuild website and manuscript #135: Pull request #1302 closed by gaow
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1m 0s
pseudobulk count preprocessing pipeline Rebuild website and manuscript #134: Pull request #1290 closed by gaow
50s
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added vqtl calculation parameter in qr_and_twas.ipynb Rebuild website and manuscript #133: Pull request #1299 closed by gaow
49s
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optimization on qr_and_twas.ipynb Rebuild website and manuscript #132: Pull request #1298 closed by gaow
1m 11s
1m 11s
minor fix on qr_and_twas.ipynb Rebuild website and manuscript #131: Pull request #1297 closed by gaow
53s
53s
added parameters in qr_and_twas.ipynb Rebuild website and manuscript #130: Pull request #1296 closed by gaow
2m 18s
2m 18s