Install ensembl perl api

Decide what version of the Data/API you need. For now we are sticking with 64(Dev,Prod), 65(Test). 68+ moves to mm10 and rn5 which we don't have correct locations for everything and all tracks are not available for.

For the current version download from here: http://www.ensembl.org/info/docs/api/api_installation.html

For previous versions see directions for CVS checkout here: http://www.ensembl.org/info/docs/api/api_cvs.html

For most machines the CVS checkout method should have been used into /opt/ensembl_ucsc/.

To update /opt/ensembl_ucsc to a new version:

cd /opt/ensembl_ucsc
cd ensembl
cvs -q update -d -P -r branch-ensembl-69
cd ..
cd ensembl-variation
cvs -q update -d -P -r branch-ensembl-69
cd ..
cd ensembl-functgenomics
cvs -q update -d -P -r branch-ensembl-69
cd ..
cd ensembl-compara
cvs -q update -d -P -r branch-ensembl-69
cd ..
cd ensembl-tools
cvs -q update -d -P -r branch-ensembl-69
cd ..

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