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Add metasubsystems file #3

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0978f76
add metasubssystems file
marouenbg Jun 23, 2022
fc63299
add metasubssystems file
marouenbg Jun 23, 2022
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -4,7 +4,7 @@ Reference: Pan-organ model integration of metabolic and regulatory processes in

Authors: Marouen Ben Guebila and Ines Thiele.

Corresponding author: Ines Thiele ines.thiele@gmail.com
Corresponding author: Ines Thiele ines.thiele AT gmail.com

## System requirements

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102 changes: 102 additions & 0 deletions common/lib/metaSubsystems.csv
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@@ -0,0 +1,102 @@
Recon 2.1 unique subSystems,Meta subSystems
"'Transport, lysosomal'",TRANSPORT
"'Transport, mitochondrial'",TRANSPORT
"'Transport, endoplasmic reticular'",TRANSPORT
'beta-Alanine metabolism',amino acid metabolism
'Vitamin D metabolism',vitamin metabolism
"'Transport, extracellular'",TRANSPORT
'Lysine metabolism',amino acid metabolism
"'Glycine, serine, alanine and threonine metabolism'",amino acid metabolism
'Methionine and cysteine metabolism',amino acid metabolism
'Pyrimidine catabolism',nucleotide metabolism
'Propanoate metabolism',miscellaneous
'Tryptophan metabolism',amino acid metabolism
'Tyrosine metabolism',amino acid metabolism
'Ubiquinone synthesis',miscellaneous
"'Transport, nuclear'",TRANSPORT
"'Valine, leucine, and isoleucine metabolism'",amino acid metabolism
'Sphingolipid metabolism',lipid metabolism
'Butanoate metabolism',miscellaneous
'Purine catabolism',nucleotide metabolism
'Taurine and hypotaurine metabolism',amino acid metabolism
'Arginine and Proline Metabolism',amino acid metabolism
'Cytochrome metabolism',ETC
'Steroid metabolism',lipid metabolism
'Heme synthesis',heme metabolism
'N-glycan degradation',carbohydrate metabolism
'O-glycan synthesis',carbohydrate metabolism
'Blood group synthesis',carbohydrate metabolism
'Glutamate metabolism',amino acid metabolism
'Pentose phosphate pathway',carbohydrate metabolism
'Cholesterol metabolism',lipid metabolism
'Fatty acid oxidation',lipid metabolism
"'Transport, peroxisomal'",TRANSPORT
"'Transport, golgi apparatus'",TRANSPORT
'Aminosugar metabolism',carbohydrate metabolism
'Phosphatidylinositol phosphate metabolism',lipid metabolism
'Urea cycle',amino acid metabolism
'Glycerophospholipid metabolism',lipid metabolism
'Citric acid cycle',carbohydrate metabolism
'Pyruvate metabolism',miscellaneous
'Bile acid synthesis',lipid metabolism
'Vitamin B2 metabolism',vitamin metabolism
'Glycolysis/gluconeogenesis',carbohydrate metabolism
'Nucleotide interconversion',nucleotide metabolism
'Nucleotide salvage pathway',nucleotide metabolism
'Selenoamino acid metabolism',amino acid metabolism
'Purine synthesis',nucleotide metabolism
'Keratan sulfate synthesis',carbohydrate metabolism
'Triacylglycerol synthesis',lipid metabolism
'Alanine and aspartate metabolism',amino acid metabolism
'Miscellaneous',miscellaneous
'Eicosanoid metabolism',lipid metabolism
'Glutathione metabolism',amino acid metabolism
'Starch and sucrose metabolism',carbohydrate metabolism
'Biotin metabolism',vitamin metabolism
'R group synthesis',lipid metabolism
'Unassigned',unassigned
'Vitamin C metabolism',vitamin metabolism
'Pyrimidine synthesis',nucleotide metabolism
'Oxidative phosphorylation',ETC
'Vitamin A metabolism',vitamin metabolism
"'Stilbene, coumarine and lignin synthesis'",miscellaneous
'N-glycan synthesis',carbohydrate metabolism
'Heme degradation',heme metabolism
Limonene and pinene degradation',lipid metabolism
'ROS detoxification',ROS
'Vitamin B12 metabolism',vitamin metabolism
'C5-branched dibasic acid metabolism',miscellaneous
'Alkaloid synthesis',miscellaneous
'Chondroitin sulfate degradation',carbohydrate metabolism
'D-alanine metabolism',amino acid metabolism
'Fatty acid synthesis',lipid metabolism
'Folate metabolism',vitamin metabolism
'Tetrahydrobiopterin metabolism',miscellaneous
'Exchange/demand reaction',exchange
'CoA synthesis',vitamin metabolism
'Keratan sulfate degradation',carbohydrate metabolism
'Fructose and mannose metabolism',carbohydrate metabolism
'Glyoxylate and dicarboxylate metabolism',miscellaneous
'Galactose metabolism',carbohydrate metabolism
'Nucleotide sugar metabolism',nucleotide metabolism
'Chondroitin synthesis',carbohydrate metabolism
'Heparan sulfate degradation',carbohydrate metabolism
'Hyaluronan metabolism',carbohydrate metabolism
'Histidine metabolism',amino acid metabolism
'Vitamin B6 metabolism',vitamin metabolism
'Inositol phosphate metabolism',lipid metabolism
'CoA catabolism',vitamin metabolism
'NAD metabolism',vitamin metabolism
'Phenylalanine metabolism',amino acid metabolism
'Thiamine metabolism',vitamin metabolism
'Androgen and estrogen synthesis and metabolism',lipid metabolism
'Lipoate metabolism',vitamin metabolism
'Arachidonic acid metabolism',lipid metabolism
'Vitamin E metabolism',vitamin metabolism
'Linoleate metabolism',lipid metabolism
'Glycosphingolipid metabolism',lipid metabolism
'Xenobiotics metabolism',xenobiotic metabolism
'Dietary fiber binding',carbohydrate metabolism
'Squalene and cholesterol synthesis',lipid metabolism
'Hippurate metabolism',amino acid metabolism
'Peptide metabolism',amino acid metabolism