Utils

A set of helpful scripts and tools for day-to-day bioinformatics tasks

• Annotation/ Functional annotation of proteins

• Bam/ Tools for parsing data in bam format

• Blast/ Tools for filtering and parsing BLAST output files

• Enrichment_Analysis/ Scripts for doing basic enrichment analysis

• Expression_Analysis/ Expression analysis scripts

• Fastx/ Tools for working with fasta/q files

• GFF/ Tools for parsing data in gff format

• Maths/ Tools for easily doing basic math on the command line

• Misc/ Commonly used bash commands make into executables

• Orthofinder_scripts/ Tools for parsing Orthofinder output files

• Phylo_Tree_Tools/ Tools for parsing phylogenetic data

• Plots/ Scripts to plot basic data structures

• Table/ Scripts to maniplulate tables on command line

• blast_header.txt

• python_boilerplate.py

• R_boilerplate.R