SEIR Example

Please note all instructions are for Unix-alike systems using bash.

Requirements

• Python3
• Python Packages
  • numpy==1.16.2
  • scipy==1.4.0
  • matplotlib==3.0.3

Quickstart

Clone and Enter the Repo

https://github.com/UT-Covid/SEIR_Example.git
cd SEIR_Example

Install Packages with PIP

pip3 install -r requirements.txt

Run the Model

python3 src/seir.py -p inputs/params_pop_sizes.json

Citation

Keeling, M.J. and Rohani, P. (2007) Modeling Infectious Diseases in Humans and Animals. Princeton University Press.