UT COVID-19 Modeling Consortium Public Code

This is a living database of all of the different code repositories the UT COVID-19 Modeling Consortium has released over the course of the pandemic.

Dashboard code

We currently host five dashboards on our website, with a sixth dashboard deprecated (https://covid-19.tacc.utexas.edu/dashboards/us/). Here are links to repositories containing code that drives the dashboards.

• Austin risk maps: https://github.com/ut-covid/texvax
• Variant detection: https://github.com/UT-Covid/variants
• Mortality forecasts: https://github.com/UT-Covid/USmortality
• Austin projections: https://github.com/UT-Covid/SEIR-Austin
• TSA projections: https://github.com/UT-Covid/SEIR-TSA

Publication code

Here we highlight the code used to drive various publications

• County risk probabilities: https://github.com/MeyersLabUTexas/COVID-19-Epidemic-Risk
• Impact of proactive social distancing: https://github.com/MeyersLabUTexas/Proactive-social-distancing-in-Chinese-cities
• Early scenario projections for Texas: https://github.com/UT-Covid/compartmental_model_case_studies
• Impact of stay at home orders and mobility on COVID-19 first wave mortality: https://github.com/audiracmichelle/covid_timing
• Detecting COVID-19 in schools: https://github.com/kej1993johnson/Detecting_school_transmission
• University vaccination and testing cost effectiveness framework: https://github.com/kej1993johnson/university_testing_vax_proj
• Variant emergence and impact estimation for B117: https://github.com/kej1993johnson/Estimating_B117

Epidemiological simulation code

A list of repositories that contain code for simulating outbreaks and epidemics

• Simulating outbreaks on networks: https://github.com/MeyersLabUTexas/sir
• Example SEIR model code: https://github.com/UT-Covid/SEIR_Example
• Modular framework for compartmental modeing: https://github.com/UT-Covid/episimlab
• Library for network simulations: https://github.com/tjhladish/EpiFire