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Merged
smgogarten merged 4 commits into from
Nov 3, 2025
Merged

V1.9.2 #41

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2c9a9ec
add enumerated values to seq_library_prep_kit_method
smgogarten Sep 5, 2025
8fcd662
replace special character with single quote
smgogarten Sep 24, 2025
e1bee55
added enumeration for barcode_kit
smgogarten Oct 14, 2025
faed817
change log for v1.9.2
smgogarten Oct 15, 2025
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16 changes: 12 additions & 4 deletions CHANGELOG.md
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# Change log

## 1.9.2

|Table |Field |Change notes |
|:------------------|:---------------------------|:-------------------------------------------------------------------------------------------|
|experiment_pac_bio |seq_library_prep_kit_method |add enumerated values 'Kinnex Full-Length RNA kit' and 'MAS-Seq for 10x Single Cell 3’ kit' |
|experiment_pac_bio |barcode_kit |change type to enumerated; add value 'SMRTbell adapter index plate 96A' |


## 1.9.1

|Table |Field |Change notes |
|:-------------------------|:---------------|:---------------------------------------------------------------|
|genetic_findings |variant_type |removed SNV/INDEL as enumerated value; use SNV or INDEL instead |
|participant |sex_detail |updated description |
|Table |Field |Change notes |
|:----------------|:------------|:---------------------------------------------------------------|
|genetic_findings |variant_type |removed SNV/INDEL as enumerated value; use SNV or INDEL instead |
|participant |sex_detail |updated description |


## 1.9
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8 changes: 4 additions & 4 deletions GREGoR_data_model.json
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{
"name": "GREGoR Data Model",
"description": "Data model for the GREGoR consortium",
"version": "1.9.1",
"version": "1.9.2",
"tables": [
{
"table": "participant",
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"required": true,
"description": "Library prep kit used",
"data_type": "enumeration",
"enumerations": ["SMRTbell prep kit 3.0", "SMRTbell prep kit - Revio 1.0", "HiFI express template prep kit 2.0"],
"enumerations": ["SMRTbell prep kit 3.0", "SMRTbell prep kit - Revio 1.0", "HiFI express template prep kit 2.0", "Kinnex Full-Length RNA kit", "MAS-Seq for 10x Single Cell 3' kit"],
"examples": "SMRTbell prep kit 3.0",
"notes": "Can be missing if RC receives external data"
},
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{
"column": "barcode_kit",
"description": "Barcode kit used",
"data_type": "string",
"enumerations": ["SMRTbell barcoded adapter plate 3.0", "Barcoded M13 primer plate", "Barcoded overhang adapter kit - 8A/8B"],
"data_type": "enumeration",
"enumerations": ["SMRTbell barcoded adapter plate 3.0", "Barcoded M13 primer plate", "Barcoded overhang adapter kit - 8A/8B", "SMRTbell adapter index plate 96A"],
"examples": "SMRTbell barcoded adapter plate 3.0"
},
{
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2 changes: 1 addition & 1 deletion sheets_to_JSON.R
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Expand Up @@ -7,7 +7,7 @@ library(jsonlite)
url <- "https://docs.google.com/spreadsheets/d/1p_0nhKMvKBueSrUAQMCe9cHv16WyhKSX_jnxNCuGFWg"
model_name = "GREGoR Data Model"
model_description = "Data model for the GREGoR consortium"
model_version = "1.9.1"
model_version = "1.9.2"

# table metadata
meta <- read_sheet(url, sheet="Table overview/status", skip=1)
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