Skip to content

V1.11.1 #47

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
smgogarten merged 4 commits into from
May 12, 2026
Merged

V1.11.1 #47

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
4 commits
Select commit Hold shift + click to select a range
aec89e9
add new data types to experiment and aligned tables
smgogarten Apr 17, 2026
2c873c4
add optical mapping to aligned table
smgogarten Apr 27, 2026
0f54a11
update changelog
smgogarten Apr 27, 2026
fab5beb
fix optical mapping enumeration
smgogarten Apr 27, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
10 changes: 10 additions & 0 deletions CHANGELOG.md
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,5 +1,15 @@
# Change log

## 1.11.1

|Table |Field |Change notes |
|:----------|:----------|:--------------------------------------------------------|
|experiment |table_name |add enumerated value 'experiment_optical_mapping' |
|experiment |table_name |add enumerated value 'experiment_iclr' |
|aligned |table_name |add enumerated value 'aligned_molecules_optical_mapping' |
|aligned |table_name |add enumerated value 'aligned_iclr' |


## 1.11

|Table |Field |Change notes |
Expand Down
6 changes: 3 additions & 3 deletions GREGoR_data_model.json
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,7 +1,7 @@
{
"name": "GREGoR Data Model",
"description": "Data model for the GREGoR consortium",
"version": "1.11",
"version": "1.11.1",
"tables": [
{
"table": "participant",
Expand Down Expand Up @@ -743,7 +743,7 @@
"column": "table_name",
"required": true,
"data_type": "enumeration",
"enumerations": ["experiment_dna_short_read", "experiment_rna_short_read", "experiment_nanopore", "experiment_pac_bio", "experiment_atac_short_read"],
"enumerations": ["experiment_dna_short_read", "experiment_rna_short_read", "experiment_nanopore", "experiment_pac_bio", "experiment_atac_short_read", "experiment_optical_mapping", "experiment_iclr"],
"examples": "experiment_dna_short_read"
},
{
Expand Down Expand Up @@ -776,7 +776,7 @@
"column": "table_name",
"required": true,
"data_type": "enumeration",
"enumerations": ["aligned_dna_short_read", "aligned_rna_short_read", "aligned_nanopore", "aligned_pac_bio", "aligned_atac_short_read"],
"enumerations": ["aligned_dna_short_read", "aligned_rna_short_read", "aligned_nanopore", "aligned_pac_bio", "aligned_atac_short_read", "aligned_molecules_optical_mapping", "aligned_iclr"],
"examples": "aligned_dna_short_read"
},
{
Expand Down
1 change: 1 addition & 0 deletions change_log.R
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -1,6 +1,7 @@
library(googlesheets4)
library(dplyr)
library(readr)
library(tidyr)

url <- "https://docs.google.com/spreadsheets/d/1p_0nhKMvKBueSrUAQMCe9cHv16WyhKSX_jnxNCuGFWg"

Expand Down
2 changes: 1 addition & 1 deletion sheets_to_JSON.R
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ library(jsonlite)
url <- "https://docs.google.com/spreadsheets/d/1p_0nhKMvKBueSrUAQMCe9cHv16WyhKSX_jnxNCuGFWg"
model_name = "GREGoR Data Model"
model_description = "Data model for the GREGoR consortium"
model_version = "1.11"
model_version = "1.11.1"

# table metadata
meta <- read_sheet(url, sheet="Table overview/status", skip=1)
Expand Down
Loading